Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		1.000 0.877 8 2005 2019
dbSNP: rs2076530
rs2076530
BTNL2 ; TSBP1-AS1
0.724 0.640 6 32396039 missense variant T/C snv 0.42 0.40
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.710 1.000 3 2005 2011
dbSNP: rs6920220
rs6920220 		0.742 0.440 6 137685367 intron variant G/A snv 0.16
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.900 0.938 5 2007 2019
dbSNP: rs2395173
rs2395173 		0.882 0.240 6 32437082 upstream gene variant A/G snv 0.62
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 4 2007 2011
dbSNP: rs2516049
rs2516049
HLA-DRB1
0.742 0.400 6 32602623 intergenic variant T/C snv 0.27
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 4 2007 2011
dbSNP: rs3761847
rs3761847
TRAF1
0.827 0.200 9 120927961 intron variant G/A snv 0.52
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.870 0.909 4 2007 2015
dbSNP: rs6457617
rs6457617 		0.763 0.480 6 32696074 intergenic variant C/A;T snv
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.820 1.000 4 2007 2018
dbSNP: rs6910071
rs6910071
TSBP1 ; TSBP1-AS1
0.790 0.320 6 32315077 intron variant A/G snv 0.14
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.810 1.000 4 2007 2016
dbSNP: rs9268368
rs9268368
TSBP1 ; TSBP1-AS1
1.000 0.120 6 32366178 missense variant T/C snv 0.42 0.33
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 4 2007 2011
dbSNP: rs9268384
rs9268384
TSBP1 ; TSBP1-AS1
1.000 0.120 6 32368809 missense variant A/G snv 0.41 0.33
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 4 2007 2011
dbSNP: rs1003878
rs1003878
TSBP1 ; TSBP1-AS1
0.882 0.200 6 32332045 stop gained G/A snv 0.19 0.23
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs1033500
rs1033500
TSBP1 ; TSBP1-AS1
1.000 0.120 6 32339605 missense variant G/A snv 0.40 0.33
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs1042663
rs1042663
C2 ; CYP21A2 ; C2-AS1
0.925 0.160 6 31937353 synonymous variant G/A snv 9.7E-02 0.12
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs10484565
rs10484565
TAP2
0.925 0.200 6 32827255 3 prime UTR variant G/A snv 6.1E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.800 1.000 3 2007 2016
dbSNP: rs1794282
rs1794282 		0.807 0.320 6 32698749 intergenic variant C/T snv 6.4E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs1980493
rs1980493
BTNL2 ; TSBP1-AS1
0.776 0.400 6 32395438 intron variant T/C snv 0.13
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs206015
rs206015
NOTCH4
0.925 0.200 6 32214982 intron variant G/A snv 0.15
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2071295
rs2071295
TNXB
0.925 0.120 6 32070923 intron variant C/T snv 0.25
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2071554
rs2071554
HLA-DOB
0.925 0.200 6 32816899 missense variant C/A;T snv 4.1E-06; 6.2E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2072633
rs2072633
CFB ; CYP21A2 ; NELFE
0.807 0.320 6 31951801 3 prime UTR variant A/G snv 0.59
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2074488
rs2074488
HLA-B ; HLA-C
0.925 0.160 6 31272654 intron variant G/T snv 0.13
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2075800
rs2075800
HSPA1L
0.776 0.440 6 31810169 missense variant C/T snv 0.32 0.25
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2076537
rs2076537
TSBP1 ; TSBP1-AS1
0.925 0.200 6 32349858 non coding transcript exon variant G/A snv 0.37 0.42
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2187668
rs2187668
HLA-DQA1 ; HLA-DQA2 ; LOC107986589
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2239689
rs2239689
TNXB
0.925 0.120 6 32062507 intron variant G/A snv 0.33 0.25
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011