Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs10239340
rs10239340
TNPO3
1.000 0.080 7 129028456 intron variant T/A;G snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 3 2008 2014
dbSNP: rs1794282
rs1794282 		0.807 0.320 6 32698749 intergenic variant C/T snv 6.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2008 2014
dbSNP: rs4548893
rs4548893
ITGAX
1.000 0.080 16 31353172 upstream gene variant C/T snv 0.20
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2008 2011
dbSNP: rs7192
rs7192
HLA-DRA
0.827 0.200 6 32443869 missense variant T/G snv 0.64 0.61
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2008 2014
dbSNP: rs7775397
rs7775397
TSBP1 ; TSBP1-AS1
0.790 0.400 6 32293475 missense variant T/G snv 6.0E-02 6.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2008 2014
dbSNP: rs7808907
rs7808907
IRF5
1.000 0.080 7 128944030 intron variant T/C snv 0.49
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2011 2014
dbSNP: rs1003878
rs1003878
TSBP1 ; TSBP1-AS1
0.882 0.200 6 32332045 stop gained G/A snv 0.19 0.23
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1012507
rs1012507
TNFSF4 ; LOC100506023
1.000 0.080 1 173250332 intergenic variant G/T snv 0.32
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2013 2013
dbSNP: rs10156091
rs10156091
ICA1
1.000 0.080 7 8147464 intron variant T/C snv 0.86
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2008 2008
dbSNP: rs10168266
rs10168266
STAT4
0.776 0.400 2 191071078 intron variant C/T snv 0.19
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2013 2013
dbSNP: rs10276619
rs10276619 		1.000 0.080 7 50273756 downstream gene variant G/A snv 0.59
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2009 2009
dbSNP: rs10279821
rs10279821
TNPO3
1.000 0.080 7 129043493 intron variant T/A;C snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2008 2008
dbSNP: rs1041981
rs1041981
LTA ; LOC100287329
0.667 0.520 6 31573007 missense variant C/A snv 0.35 0.38
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1046089
rs1046089
PRRC2A
0.882 0.200 6 31635190 missense variant G/A snv 0.36 0.40
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs10484399
rs10484399 		0.851 0.240 6 27566749 intergenic variant A/G snv 5.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1077393
rs1077393
BAG6
0.882 0.200 6 31642752 non coding transcript exon variant A/G snv 0.44
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs10903340
rs10903340 		1.000 0.080 8 11593078 regulatory region variant T/A;C;G snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2008 2008
dbSNP: rs10931481
rs10931481
STAT4
0.827 0.240 2 191090126 intron variant G/A snv 0.66
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2011 2011
dbSNP: rs11229
rs11229
PRRC2A
0.851 0.280 6 31635993 synonymous variant A/G snv 0.14 0.17
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1167797
rs1167797
HIP1
1.000 0.080 7 75546611 intron variant C/A;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2009 2009
dbSNP: rs11783247
rs11783247
XKR6
1.000 0.080 8 10931365 intron variant C/T snv 0.54
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2008 2008
dbSNP: rs1233579
rs1233579 		0.925 0.160 6 28744886 intergenic variant A/G snv 7.2E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1235162
rs1235162
GABBR1
0.827 0.280 6 29569447 intron variant A/G snv 6.0E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs13194504
rs13194504 		0.925 0.120 6 28662914 intergenic variant G/A snv 5.1E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs13194781
rs13194781
H2BC15
1.000 0.080 6 27847861 intron variant A/G snv 5.3E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014