Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs7574865
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 0.967 7 2007 2017
dbSNP: rs13277113
rs13277113
BLK
0.695 0.520 8 11491677 intron variant G/A snv 0.25
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.890 1.000 4 2008 2019
dbSNP: rs729302
rs729302 		0.827 0.160 7 128928906 intergenic variant A/C snv 0.28
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.820 1.000 4 2008 2013
dbSNP: rs9888739
rs9888739
ITGAM
0.882 0.120 16 31301932 intron variant C/T snv 0.26
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 4 2008 2014
dbSNP: rs10239340
rs10239340
TNPO3
1.000 0.080 7 129028456 intron variant T/A;G snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 3 2008 2014
dbSNP: rs10488631
rs10488631
TNPO3
0.742 0.280 7 128954129 upstream gene variant T/C snv 9.0E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 3 2008 2016
dbSNP: rs1143678
rs1143678
ITGAM
1.000 0.080 16 31331684 missense variant C/T snv 0.15 0.17
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.730 1.000 3 2008 2017
dbSNP: rs12537284
rs12537284 		1.000 0.080 7 129077852 intergenic variant G/A snv 0.11
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 3 2008 2014
dbSNP: rs2187668
rs2187668
HLA-DQA1 ; HLA-DQA2 ; LOC107986589
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 3 2008 2016
dbSNP: rs1270942
rs1270942
CFB ; CYP21A2
0.742 0.440 6 31951083 non coding transcript exon variant A/G snv 7.5E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 2 2008 2015
dbSNP: rs1794282
rs1794282 		0.807 0.320 6 32698749 intergenic variant C/T snv 6.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2008 2014
dbSNP: rs2230926
rs2230926
TNFAIP3
0.662 0.440 6 137874929 missense variant T/C;G snv 4.0E-06; 5.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 0.867 2 2008 2019
dbSNP: rs2248932
rs2248932
BLK
0.882 0.160 8 11534141 intron variant A/G snv 0.60
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.720 1.000 2 2008 2011
dbSNP: rs3131379
rs3131379
MSH5 ; MSH5-SAPCD1
0.752 0.440 6 31753256 intron variant G/A snv 6.4E-02 7.9E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 2 2008 2016
dbSNP: rs3821236
rs3821236
STAT4
0.882 0.160 2 191038032 intron variant G/A snv 0.25
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 2 2008 2016
dbSNP: rs4548893
rs4548893
ITGAX
1.000 0.080 16 31353172 upstream gene variant C/T snv 0.20
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2008 2011
dbSNP: rs7192
rs7192
HLA-DRA
0.827 0.200 6 32443869 missense variant T/G snv 0.64 0.61
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2008 2014
dbSNP: rs7775397
rs7775397
TSBP1 ; TSBP1-AS1
0.790 0.400 6 32293475 missense variant T/G snv 6.0E-02 6.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 2 2008 2014
dbSNP: rs9275572
rs9275572 		0.724 0.360 6 32711222 upstream gene variant A/G;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 2 2008 2016
dbSNP: rs10156091
rs10156091
ICA1
1.000 0.080 7 8147464 intron variant T/C snv 0.86
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2008 2008
dbSNP: rs10279821
rs10279821
TNPO3
1.000 0.080 7 129043493 intron variant T/A;C snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2008 2008
dbSNP: rs10516487
rs10516487
BANK1
0.752 0.360 4 101829919 missense variant G/A;T snv 0.26; 8.0E-06
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.880 1.000 1 2008 2019
dbSNP: rs10798269
rs10798269
TNFSF4 ; LOC100506023
1.000 0.080 1 173340574 intergenic variant A/G;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 1 2008 2008
dbSNP: rs10903340
rs10903340 		1.000 0.080 8 11593078 regulatory region variant T/A;C;G snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2008 2008
dbSNP: rs11574637
rs11574637
ITGAX
0.882 0.200 16 31357553 missense variant T/C snv 0.21
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.820 1.000 1 2008 2011