Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs1050631
rs1050631
SLC39A6
0.882 0.080 18 36114157 synonymous variant G/A snv 0.33 0.30
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.800 1.000 1 2013 2013
dbSNP: rs2285947
rs2285947
DNAH11
0.807 0.120 7 21544470 intron variant G/A snv 0.44
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.800 1.000 1 2012 2012
dbSNP: rs2494938
rs2494938
LRFN2
0.752 0.240 6 40568389 intron variant G/A snv 0.51
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.800 1.000 1 2012 2012
dbSNP: rs12296850
rs12296850 		0.925 0.080 12 100426307 downstream gene variant A/G snv 8.7E-02
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.710 1.000 1 2013 2013
dbSNP: rs10455872
rs10455872
LPA
0.662 0.320 6 160589086 intron variant A/G snv 4.3E-02
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs11206510
rs11206510 		0.763 0.240 1 55030366 intergenic variant T/A;C;G snv
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs2075650
rs2075650
TOMM40
0.662 0.360 19 44892362 intron variant A/G snv 0.13 0.13
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs3846662
rs3846662
HMGCR
0.763 0.280 5 75355259 non coding transcript exon variant A/G snv 0.50 0.58
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs405509
rs405509
APOE
0.667 0.480 19 44905579 upstream gene variant T/G snv 0.58
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs4149056
rs4149056
SLCO1B1
0.633 0.480 12 21178615 missense variant T/C snv 0.13 0.12
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs4299376
rs4299376
ABCG8 ; LOC102725159
0.851 0.120 2 43845437 intron variant G/C;T snv
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs4803750
rs4803750
BCL3
0.807 0.240 19 44744370 upstream gene variant A/G snv 7.7E-02
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs646776
rs646776
CELSR2
0.752 0.240 1 109275908 downstream gene variant C/T snv 0.74
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs6511720
rs6511720
LDLR
0.790 0.120 19 11091630 intron variant G/T snv 0.12
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs7242481
rs7242481
SLC39A6 ; ELP2
0.925 0.080 18 36129254 5 prime UTR variant G/A snv 0.35
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2013 2013
dbSNP: rs7412
rs7412
APOE
0.641 0.640 19 44908822 missense variant C/T snv 6.2E-02 7.9E-02
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012