Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 673
Gene Symbol: BRAF
BRAF
CUI: C0025202
Disease: melanoma
melanoma
1.000 GeneticVariation BEFREE The activation of oncogenic mitogen-activated protein kinase cascade via mutations in BRAF is often observed in human melanomas. 31571292

2020

Entrez Id: 673
Gene Symbol: BRAF
BRAF
CUI: C0025202
Disease: melanoma
melanoma
1.000 GeneticVariation BEFREE A 39-year-old white male was treated with vemurafenib, cobimetinib, and atezolizumab for a stage IV (T0, N3, M1) BRAF-V600E mutated malignant melanoma in the context of a clinical trial. 31157737

2020

Entrez Id: 5728
Gene Symbol: PTEN
PTEN
CUI: C0025202
Disease: melanoma
melanoma
0.800 PosttranslationalModification BEFREE Somatic oncogenic mutation of BRAF coupled with inactivation of PTEN constitute a frequent combination of genomic alterations driving the development of human melanoma. 31065107

2020

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0025202
Disease: melanoma
melanoma
0.800 Biomarker BEFREE Compared with having a truncal melanoma, CDK4 (vs. noncarriers: lower extremities OR = 14.5, 95% confidence interval [CI] = 5.02-42.0, P < 0.001; upper extremities OR = 6.88, 95% CI = 2.37-19.9, P < 0.001; head and neck OR = 18.6, 95% CI = 4.04-85.2, P < 0.001) and CDKN2A (vs. noncarriers: lower extremities OR = 3.01, 95% CI = 1.56-5.82, P < 0.05; upper extremities OR = 1.91, 95% CI = 1.03-3.52, P < 0.05; head and neck OR = 5.40, 95% CI = 2.10-13.9, P < 0.001) carriers had higher odds of developing melanoma at all other sites. 31326397

2020

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
CUI: C0025202
Disease: melanoma
melanoma
0.800 GeneticVariation BEFREE This study investigated whether genetic counseling and test reporting for the highly penetrant CDKN2A melanoma predisposition gene promoted decreases in sun exposure. 31371819

2020

Entrez Id: 4286
Gene Symbol: MITF
MITF
CUI: C0025202
Disease: melanoma
melanoma
0.700 Biomarker BEFREE Our results reveal that MITF is a lineage-specific regulator of metabolic reprogramming, whereby fatty acid composition is a driver of melanoma phenotype switching, and highlight that cell phenotype dictates the response to drugs targeting lipid metabolism. 31733993

2020

Entrez Id: 7157
Gene Symbol: TP53
TP53
CUI: C0025202
Disease: melanoma
melanoma
0.700 Biomarker BEFREE Paradoxical Role for Wild-Type p53 in Driving Therapy Resistance in Melanoma. 31836388

2020

Entrez Id: 4893
Gene Symbol: NRAS
NRAS
CUI: C0025202
Disease: melanoma
melanoma
0.700 GeneticVariation BEFREE Combined therapeutic targeted strategies are awaited in NRAS-mutated and KIT-altered melanoma and could provide additional benefit. 31833955

2020

Entrez Id: 4893
Gene Symbol: NRAS
NRAS
CUI: C0025202
Disease: melanoma
melanoma
0.700 GeneticVariation BEFREE Similar results were obtained for TRB CDR3s and NRAS mutants in melanoma. 31740784

2020

Entrez Id: 4893
Gene Symbol: NRAS
NRAS
CUI: C0025202
Disease: melanoma
melanoma
0.700 Biomarker BEFREE Intra-patient heterogeneity was detected in 13.3% of patients for both BRAF and NRAS genes and was not associated with clinico-pathological characteristics of melanomas or metastases. 31774543

2020

Entrez Id: 4893
Gene Symbol: NRAS
NRAS
CUI: C0025202
Disease: melanoma
melanoma
0.700 GeneticVariation BEFREE Accordingly, in a cohort of 79 BRAF/NRAS double wild type cutaneous melanoma and 17 mucosal melanoma KIT mutation was assessed by Sanger sequencing of exons 9,11,13,17 and 18. 31848942

2020

Entrez Id: 4893
Gene Symbol: NRAS
NRAS
CUI: C0025202
Disease: melanoma
melanoma
0.700 GeneticVariation BEFREE Our findings thus show a new pathway involved in NRAS-mutant melanoma resistance and provide new opportunities for novel therapeutic options. 31549767

2020

Entrez Id: 4893
Gene Symbol: NRAS
NRAS
CUI: C0025202
Disease: melanoma
melanoma
0.700 GeneticVariation BEFREE Our study aims to evaluate and review other studies that present the frequency of mutations of BRAF, NRAS, and KIT genes for different populations, and analyse correlation to their clinical-pathological characteristics and to the demographics of melanoma. 31274706

2020

Entrez Id: 1019
Gene Symbol: CDK4
CDK4
CUI: C0025202
Disease: melanoma
melanoma
0.700 Biomarker BEFREE Compared with having a truncal melanoma, CDK4 (vs. noncarriers: lower extremities OR = 14.5, 95% confidence interval [CI] = 5.02-42.0, P < 0.001; upper extremities OR = 6.88, 95% CI = 2.37-19.9, P < 0.001; head and neck OR = 18.6, 95% CI = 4.04-85.2, P < 0.001) and CDKN2A (vs. noncarriers: lower extremities OR = 3.01, 95% CI = 1.56-5.82, P < 0.05; upper extremities OR = 1.91, 95% CI = 1.03-3.52, P < 0.05; head and neck OR = 5.40, 95% CI = 2.10-13.9, P < 0.001) carriers had higher odds of developing melanoma at all other sites. 31326397

2020

Entrez Id: 7157
Gene Symbol: TP53
TP53
CUI: C0025202
Disease: melanoma
melanoma
0.700 Biomarker BEFREE In this study, we used wild-type (A375) and mutant p53 (MeWo) melanoma cell lines to assess the regulation of the mitochondrial antioxidant manganese superoxide dismutase (MnSOD) by mutant p53. 31812668

2020

Entrez Id: 4157
Gene Symbol: MC1R
MC1R
CUI: C0025202
Disease: melanoma
melanoma
0.500 GeneticVariation BEFREE Homozygous loss of function of the melanocortin 1 receptor (MC1R) is associated with a pheomelanotic pigment phenotype and increased melanoma risk. 31398282

2020

Entrez Id: 3815
Gene Symbol: KIT
KIT
CUI: C0025202
Disease: melanoma
melanoma
0.500 GeneticVariation BEFREE The relatively high KIT mutation rate in cutaneous melanoma in this central-European cohort justifies regular testing of this molecular target in this entity, not only in mucosal variants. 31848942

2020

Entrez Id: 3815
Gene Symbol: KIT
KIT
CUI: C0025202
Disease: melanoma
melanoma
0.500 GeneticVariation BEFREE In contrast, SF3B1 and KIT have higher mutation rate in mucosal melanoma as compared to cutaneous melanoma. 31655118

2020

Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
CUI: C0025202
Disease: melanoma
melanoma
0.500 AlteredExpression BEFREE Our study concluded that miR-140-5p hindered cell proliferation, invasion, and tumorigenesis by targeting SOX4 via inactivation of the Wnt/β-catenin and NF-κB signaling pathways in malignant melanoma, which provides an underlying molecular mechanism for the treatment for melanoma with miRNAs. 31385607

2020

Entrez Id: 4157
Gene Symbol: MC1R
MC1R
CUI: C0025202
Disease: melanoma
melanoma
0.500 Biomarker BEFREE We examined known sex-related prognosis factors as they relate to features of melanoma and evaluated the sex-specific role of MC1R in overall and melanoma-specific survival. 31016712

2020

Entrez Id: 3815
Gene Symbol: KIT
KIT
CUI: C0025202
Disease: melanoma
melanoma
0.500 Biomarker BEFREE Our study aims to evaluate and review other studies that present the frequency of mutations of BRAF, NRAS, and KIT genes for different populations, and analyse correlation to their clinical-pathological characteristics and to the demographics of melanoma. 31274706

2020

Entrez Id: 207
Gene Symbol: AKT1
AKT1
CUI: C0025202
Disease: melanoma
melanoma
0.500 Biomarker BEFREE MCM7 might mediate the AKT1/mTOR signaling pathway to influence the progress of melanoma. 31535400

2020

Entrez Id: 3815
Gene Symbol: KIT
KIT
CUI: C0025202
Disease: melanoma
melanoma
0.500 GeneticVariation BEFREE Finally, activating KIT mutations are rarely found to cause melanomas and may provide an actionable target for therapy. 31753111

2020

Entrez Id: 4193
Gene Symbol: MDM2
MDM2
CUI: C0025202
Disease: melanoma
melanoma
0.500 Biomarker BEFREE The performance of the proposed methodology is investigated by applying a state-feedback controller to two GRN models: a melanoma WNT5A Boolean network and a p53-MDM2 negative feedback loop Boolean network, when the cost of the undesirable states, and thus the identity of the undesirable genes, is learned using the proposed methodology. 29993697

2020

Entrez Id: 5133
Gene Symbol: PDCD1
PDCD1
CUI: C0025202
Disease: melanoma
melanoma
0.400 Biomarker BEFREE Since 2014, programmed cell death protein 1 (PD-1)/programmed cell death ligand 1 (PD-L1) checkpoint inhibitors have been approved by various regulatory agencies for the treatment of multiple cancers including melanoma, lung cancer, urothelial carcinoma, renal cell carcinoma, head and neck cancer, classical Hodgkin lymphoma, colorectal cancer, gastroesophageal cancer, hepatocellular cancer, and other solid tumors. 31584451

2020