Source: GWASCAT

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs80209296
rs80209296
PTPN2
0.925 0.200 18 12860802 intron variant G/A snv
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2016 2016
dbSNP: rs80209296
rs80209296
PTPN2
0.925 0.200 18 12860802 intron variant G/A snv
CUI: C0007570
Disease: Celiac Disease
Celiac Disease 		0.700 1.000 1 2016 2016
dbSNP: rs149850873
rs149850873
PTPN2
0.807 0.120 18 12885121 intron variant G/A snv 1.7E-02
CUI: C1858558
Disease: Rheumatoid Arthritis, Systemic Juvenile
Rheumatoid Arthritis, Systemic Juvenile 		0.700 1.000 1 2013 2013
dbSNP: rs149850873
rs149850873
PTPN2
0.807 0.120 18 12885121 intron variant G/A snv 1.7E-02
CUI: C1384600
Disease: Systemic onset juvenile chronic arthritis
Systemic onset juvenile chronic arthritis 		0.700 1.000 1 2013 2013
dbSNP: rs149850873
rs149850873
PTPN2
0.807 0.120 18 12885121 intron variant G/A snv 1.7E-02
CUI: C3898105
Disease: Oligoarticular Juvenile Idiopathic Arthritis
Oligoarticular Juvenile Idiopathic Arthritis 		0.700 1.000 1 2013 2013
dbSNP: rs149850873
rs149850873
PTPN2
0.807 0.120 18 12885121 intron variant G/A snv 1.7E-02
CUI: C0087031
Disease: Juvenile-Onset Still Disease
Juvenile-Onset Still Disease 		0.700 1.000 1 2013 2013
dbSNP: rs149850873
rs149850873
PTPN2
0.807 0.120 18 12885121 intron variant G/A snv 1.7E-02
CUI: C2931171
Disease: Juvenile pauciarticular chronic arthritis
Juvenile pauciarticular chronic arthritis 		0.700 1.000 1 2013 2013
dbSNP: rs149850873
rs149850873
PTPN2
0.807 0.120 18 12885121 intron variant G/A snv 1.7E-02
CUI: C3890205
Disease: Polyarticular Juvenile Idiopathic Arthritis, Rheumatoid Factor Negative
Polyarticular Juvenile Idiopathic Arthritis, Rheumatoid Factor Negative 		0.700 1.000 1 2013 2013
dbSNP: rs62097857
rs62097857
PTPN2
0.827 0.120 18 12857759 intron variant G/A snv 2.9E-02
CUI: C0038013
Disease: Ankylosing spondylitis
Ankylosing spondylitis 		0.700 1.000 1 2016 2016
dbSNP: rs62097857
rs62097857
PTPN2
0.827 0.120 18 12857759 intron variant G/A snv 2.9E-02
CUI: C0033860
Disease: Psoriasis
Psoriasis 		0.700 1.000 1 2016 2016
dbSNP: rs62097857
rs62097857
PTPN2
0.827 0.120 18 12857759 intron variant G/A snv 2.9E-02
CUI: C0008313
Disease: Cholangitis, Sclerosing
Cholangitis, Sclerosing 		0.700 1.000 1 2016 2016
dbSNP: rs62097857
rs62097857
PTPN2
0.827 0.120 18 12857759 intron variant G/A snv 2.9E-02
CUI: C0009324
Disease: Ulcerative Colitis
Ulcerative Colitis 		0.700 1.000 1 2016 2016
dbSNP: rs62097857
rs62097857
PTPN2
0.827 0.120 18 12857759 intron variant G/A snv 2.9E-02
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.700 1.000 1 2016 2016
dbSNP: rs12967678
rs12967678
PTPN2
0.925 0.080 18 12805389 intron variant G/A snv 8.0E-02
CUI: C4049006
Disease: Selective immunoglobulin A deficiency
Selective immunoglobulin A deficiency 		0.700 1.000 1 2016 2016
dbSNP: rs12967678
rs12967678
PTPN2
0.925 0.080 18 12805389 intron variant G/A snv 8.0E-02
CUI: C0162538
Disease: Immunoglobulin A deficiency (disorder)
Immunoglobulin A deficiency (disorder) 		0.700 1.000 1 2016 2016
dbSNP: rs80262450
rs80262450
PTPN2
1.000 0.040 18 12818923 intron variant G/A snv 8.0E-02
CUI: C0021390
Disease: Inflammatory Bowel Diseases
Inflammatory Bowel Diseases 		0.700 1.000 1 2017 2017
dbSNP: rs80262450
rs80262450
PTPN2
1.000 0.040 18 12818923 intron variant G/A snv 8.0E-02
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.700 1.000 1 2017 2017
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.700 1.000 1 2016 2016
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0008313
Disease: Cholangitis, Sclerosing
Cholangitis, Sclerosing 		0.700 1.000 1 2016 2016
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0009324
Disease: Ulcerative Colitis
Ulcerative Colitis 		0.700 1.000 1 2016 2016
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0033860
Disease: Psoriasis
Psoriasis 		0.700 1.000 1 2016 2016
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0038013
Disease: Ankylosing spondylitis
Ankylosing spondylitis 		0.700 1.000 1 2016 2016
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0014772
Disease: Red Blood Cell Count measurement
Red Blood Cell Count measurement 		0.700 1.000 1 2019 2019
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.850 1.000 2 2008 2016
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0004364
Disease: Autoimmune Diseases
Autoimmune Diseases 		0.810 1.000 2 2011 2019