Source: BEFREE

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs121913364
rs121913364
BRAF
0.641 0.520 7 140753334 missense variant T/C;G snv 4.0E-06
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2014 2014
dbSNP: rs3748093
rs3748093
BRAF
0.925 0.120 7 140800651 intron variant T/A snv 1.5E-02
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2013 2013
dbSNP: rs4938723
rs4938723
BTG4 ; MIR34B ; MIR34C ; LOC728196
0.574 0.680 11 111511840 intron variant T/C snv 0.32
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2019 2019
dbSNP: rs3829078
rs3829078
CA9
0.851 0.160 9 35679254 missense variant A/G;T snv 8.2E-02
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2019 2019
dbSNP: rs2071676
rs2071676
CA9 ; ARHGEF39
0.925 0.120 9 35674056 missense variant G/A snv 0.37 0.30
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2012 2012
dbSNP: rs4705341
rs4705341
CARMN
0.882 0.120 5 149426373 non coding transcript exon variant A/G snv 0.13
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2016 2016
dbSNP: rs4784227
rs4784227
CASC16
0.807 0.160 16 52565276 intron variant C/T snv 0.20
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2020 2020
dbSNP: rs14304
rs14304
CCL18
1.000 0.080 17 36071135 3 prime UTR variant T/C snv 0.78
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2012 2012
dbSNP: rs10491121
rs10491121
CCL4 ; LOC101927369
0.882 0.120 17 36102943 upstream gene variant G/A snv 0.32
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2018 2018
dbSNP: rs16893344
rs16893344
CCN4
0.807 0.160 8 133194036 intron variant C/T snv 0.29
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2017 2017
dbSNP: rs3218038
rs3218038
CCNE1
0.882 0.120 19 29814988 intron variant G/T snv 9.1E-02
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2012 2012
dbSNP: rs187115
rs187115
CD44
0.695 0.320 11 35154612 intron variant T/C snv 0.37
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2019 2019
dbSNP: rs7628626
rs7628626
CD80 ; TIMMDC1
0.925 0.120 3 119525574 3 prime UTR variant A/C snv 0.82
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2015 2015
dbSNP: rs7186053
rs7186053
CDH1
1.000 0.080 16 68805390 intron variant A/G snv 0.69
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2015 2015
dbSNP: rs438034
rs438034
CENPF
0.882 0.120 1 214657274 stop gained A/G;T snv 0.61
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2009 2009
dbSNP: rs738722
rs738722
CHEK2
0.882 0.120 22 28734024 intron variant T/C snv 0.67
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2012 2012
dbSNP: rs2236142
rs2236142
CHEK2 ; HSCB
0.827 0.120 22 28741956 5 prime UTR variant G/C snv 0.66
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2012 2012
dbSNP: rs10399805
rs10399805
CHI3L1
0.851 0.240 1 203186870 upstream gene variant G/A;T snv
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2019 2019
dbSNP: rs6691378
rs6691378
CHI3L1
0.882 0.160 1 203187994 upstream gene variant G/A snv 0.19
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2019 2019
dbSNP: rs9331888
rs9331888
CLU ; MIR6843
0.827 0.200 8 27611345 5 prime UTR variant C/G snv 0.35 0.28
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2012 2012
dbSNP: rs6720283
rs6720283
COL6A3
0.882 0.120 2 237401239 intron variant G/A snv 0.31
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2019 2019
dbSNP: rs10420252
rs10420252
COX6B1
1.000 0.080 19 35648270 upstream gene variant G/A snv 9.7E-02
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2012 2012
dbSNP: rs6510502
rs6510502
COX6B1
1.000 0.080 19 35647577 upstream gene variant A/C;G snv
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2012 2012
dbSNP: rs1205
rs1205
CRP
0.602 0.680 1 159712443 3 prime UTR variant C/T snv 0.30
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2014 2014
dbSNP: rs770327175
rs770327175
CXCR4
0.851 0.120 2 136115878 missense variant C/A;T snv 8.0E-06
CUI: C0686619
Disease: Secondary malignant neoplasm of lymph node
Secondary malignant neoplasm of lymph node 		0.010 1.000 1 2015 2015