Source: GWASCAT

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs7574865
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 0.967 7 2007 2017
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 0.972 6 2004 2019
dbSNP: rs2230926
rs2230926
TNFAIP3
0.662 0.440 6 137874929 missense variant T/C;G snv 4.0E-06; 5.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 0.867 4 2008 2019
dbSNP: rs1143679
rs1143679
ITGAM
0.732 0.520 16 31265490 missense variant G/A snv 9.7E-02 0.11
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 1.000 3 2009 2019
dbSNP: rs13277113
rs13277113
BLK
0.695 0.520 8 11491677 intron variant G/A snv 0.25
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.890 1.000 2 2008 2019
dbSNP: rs2205960
rs2205960
TNFSF4
0.763 0.400 1 173222336 intergenic variant G/A;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.880 1.000 4 2009 2019
dbSNP: rs10516487
rs10516487
BANK1
0.752 0.360 4 101829919 missense variant G/A;T snv 0.26; 8.0E-06
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.880 1.000 2 2008 2019
dbSNP: rs2736340
rs2736340 		0.683 0.480 8 11486464 upstream gene variant C/T snv 0.25
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.870 1.000 5 2009 2019
dbSNP: rs5029939
rs5029939
TNFAIP3
0.701 0.440 6 137874586 intron variant C/G snv 0.13
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.850 1.000 2 2008 2017
dbSNP: rs17266594
rs17266594
BANK1
0.807 0.280 4 101829765 intron variant T/C snv 0.25 0.27
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.850 1.000 1 2008 2017
dbSNP: rs2431697
rs2431697 		0.776 0.240 5 160452971 intron variant T/C snv 0.44
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.840 1.000 2 2008 2017
dbSNP: rs9271366
rs9271366 		0.807 0.240 6 32619077 intergenic variant G/A snv 0.86
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.840 1.000 1 2009 2019
dbSNP: rs10488631
rs10488631
TNPO3
0.742 0.280 7 128954129 upstream gene variant T/C snv 9.0E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 4 2008 2016
dbSNP: rs10036748
rs10036748
TNIP1
0.752 0.360 5 151078585 intron variant C/A;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 3 2009 2017
dbSNP: rs4917014
rs4917014 		0.807 0.360 7 50266267 upstream gene variant T/G snv 0.26
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 3 2009 2017
dbSNP: rs4963128
rs4963128
PHRF1
0.882 0.120 11 589564 intron variant T/C snv 0.64
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 2 2008 2012
dbSNP: rs548234
rs548234
ATG5
0.763 0.360 6 106120159 intron variant C/T snv 0.76
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 1 2009 2017
dbSNP: rs6445975
rs6445975
PXK
0.851 0.160 3 58384450 intron variant G/T snv 0.63
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 1 2008 2012
dbSNP: rs6590330
rs6590330 		0.851 0.280 11 128441164 intergenic variant G/A;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.820 1.000 2 2009 2015
dbSNP: rs729302
rs729302 		0.827 0.160 7 128928906 intergenic variant A/C snv 0.28
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.820 1.000 2 2008 2013
dbSNP: rs11574637
rs11574637
ITGAX
0.882 0.200 16 31357553 missense variant T/C snv 0.21
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.820 1.000 1 2008 2011
dbSNP: rs340630
rs340630
AFF1
0.925 0.120 4 87037243 intron variant G/A snv 0.42
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.820 1.000 1 2012 2012
dbSNP: rs13385731
rs13385731
RASGRP3
0.882 0.200 2 33476823 intron variant T/C snv 6.3E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 3 2009 2017
dbSNP: rs1801274
rs1801274
FCGR2A
0.597 0.800 1 161509955 missense variant A/C;G snv 4.0E-06; 0.48
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 3 2008 2017
dbSNP: rs4948496
rs4948496
ARID5B
0.925 0.120 10 62045858 intron variant T/C snv 0.55
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 3 2013 2016