Source: BEFREE

Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1444669684
rs1444669684
CUI: C0027651
Disease: Neoplasms
Neoplasms
0.090 GeneticVariation BEFREE Kras(G12D) and Smad4/Dpc4 haploinsufficiency cooperate to induce mucinous cystic neoplasms and invasive adenocarcinoma of the pancreas. 17349581

2007

dbSNP: rs1444669684
rs1444669684
CUI: C0027651
Disease: Neoplasms
Neoplasms
0.090 GeneticVariation BEFREE However, we identified a p14ARF exon 1beta missense germline mutation (G16D) in a melanoma-neural system tumour syndrome (CMM+NST) family and a 8474 bp germline deletion from 196 bp upstream of p14ARF exon 1beta initiation codon to 11233 bp upstream of exon 1alpha of p16(INK4A) in a family with five melanoma cases. 15937071

2006

dbSNP: rs771138120
rs771138120
CUI: C0025202
Disease: melanoma
melanoma
0.070 GeneticVariation BEFREE Here, using a bigenic mouse model system combining mutant oncogenic NRAS(Q61K) (constitutively active RAS) or mutant activated CDK4(R24C/R24C) (prevents binding of CDK4 by kinase inhibitor p16(INK4A)) with an epidermis-specific knockout of the nuclear retinoid X receptor alpha (RXRα(ep-/-)) results in increased melanoma formation after chronic ultraviolet-B (UVB) irradiation compared with control mice with functional RXRα. 25189354

2015

dbSNP: rs771138120
rs771138120
CUI: C0025202
Disease: melanoma
melanoma
0.070 GeneticVariation BEFREE A mutation of the p16(INK4a)-binding domain of the cyclin dependent kinase 4 (CDK4) gene, R24C, has been reported in some cases of melanoma. 12731669

2003

dbSNP: rs771138120
rs771138120
CUI: C0025202
Disease: melanoma
melanoma
0.070 GeneticVariation BEFREE Dominant activating mutations affecting codon 24 of the CDK4 gene (replacement of Arg24 by Cys or His) render CDK4 insensitive to p16(INK4) inhibition and are responsible for melanoma susceptibility in some kindreds. 12904177

2003

dbSNP: rs771138120
rs771138120
CUI: C0025202
Disease: melanoma
melanoma
0.070 GeneticVariation BEFREE The observation that a wide variety of tumors develop in mice harboring the Cdk4(R24C) mutation offers a genetic proof that Cdk4 activation may constitute a central event in the genesis of many types of cancers in addition to melanoma. 11756559

2002

dbSNP: rs771138120
rs771138120
CUI: C0025202
Disease: melanoma
melanoma
0.070 GeneticVariation BEFREE As the pivotal residues around the most predominant R24C activating CDK4 mutation are invariant between CDK2 and CDK4, we speculated that the pivotal arginine (position 22 in CDK2), or a nearby residue, may be mutated in some melanomas, resulting in the diminution of its binding and inhibition by p27KIP1 or p21CIP1. 11479422

2001

dbSNP: rs771138120
rs771138120
CUI: C0025202
Disease: melanoma
melanoma
0.070 GeneticVariation BEFREE The recent discovery of a common missense mutation (Arg24Cys) in both sporadic and familial forms of malignant melanoma strongly supports the candidacy of CDK4 as a proto-oncogene. 9311594

1997

dbSNP: rs771138120
rs771138120
CUI: C0025202
Disease: melanoma
melanoma
0.070 GeneticVariation BEFREE In the case of CDK4, only one specific mutation, resulting in the substitution of a cysteine for an arginine at codon 24 (R24C), has been found to be associated with melanoma. 9416844

1997

dbSNP: rs104894095
rs104894095
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE The M53I mutation in CDKN2A is a founder mutation that predominates in melanoma patients with Scottish ancestry. 17171691

2007

dbSNP: rs104894095
rs104894095
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE The previously described Met53Ile CDKN2A mutation located in exon 2 was detected in a female patient with melanoma metastatic to the regional lymph nodes, multiple primary cutaneous lesions, atypical naevi and a first-degree relative with melanoma. 12459645

2002

dbSNP: rs104894095
rs104894095
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE The cellular activities of four melanoma-associated p16(INK4a) mutations (Arg24Pro, Ala36Pro, Met53Ile, and Val126Asp) were compared by use of inducible expression in stably transfected melanoma cells, deficient in expression of the endogenous protein, and compared with their ability to bind CDK4. 11595726

2001

dbSNP: rs104894095
rs104894095
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE Among a group of 49 patients, we detected 1 (2%; 95% confidence interval, 0.07%-10.8%) Met 53 Ile CDKN2A mutation, which was found in a patient with a strong family history of melanoma. 10987867

2000

dbSNP: rs104894095
rs104894095
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE One multiple primary melanoma patient also has the Met 53 Ile mutation and a second has a G-T substitution at the IVS2 + 1 splice donor site. 9699728

1998

dbSNP: rs104894095
rs104894095
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE In binding assays the protein expressed from the previously described mutation, Met53Ile, did not bind to CDK4/CDK6, confirming its role as a causal mutation in the development of melanoma. 9328469

1997

dbSNP: rs3731249
rs3731249
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE Our data suggest that CDKN2A p.A148T</span> is a m</span>elanoma susceptibility allele in Southern Brazil and is particularly common in patients with melanoma of predominantly European ancestry. 21895773

2011

dbSNP: rs3731249
rs3731249
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE The proportion of cases with polymorphisms in this Latvian me</span>lanoma population was Ala148Thr (c.442G>A) (6%), 500 C/G (c.*29C>G) (18%), and 540 C/T (c.*69C>T) (20%); however, only the frequency of the Ala148Thr polymorphism was higher in melanoma patients than in 203 controls (6 versus 1%, P=0.03). 17505264

2007

dbSNP: rs3731249
rs3731249
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE The obtained results allow us to conclude: (i) survival times of 500 C/G carriers vs. cumulating proportion surviving was not statistically significant; (ii) CDKN2a polymorphism 500 C/G correlated with Ala148Thr; (iii) no correlation was observed between the 500 C/G polymorphism and age of diagnosis, localization of primary melanoma and survival time; (iv) we did not find correlation between 500 C/G and type of cancer in the family; (v) changes in the CDKN2a gene were not found in patients with second cancer. 17351674

2007

dbSNP: rs3731249
rs3731249
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE A common missense variant of the CDKN2A gene (A148T) predisposes to malignant melanoma in Poland. 15879498

2005

dbSNP: rs3731249
rs3731249
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE In conclusion, the A148T variant of the CDKN2A gene seems to be associated with an increased risk of development of MM. 15705881

2005

dbSNP: rs3731249
rs3731249
CUI: C0025202
Disease: melanoma
melanoma
0.060 GeneticVariation BEFREE There was no association between Ala148Thr status and nevus number or history of melanoma, and therefore the results did not support the hypothesis that the Ala148Thr variant is a low penetrance melanoma or nevus susceptibility allele. 12406345

2002

dbSNP: rs104894098
rs104894098
CUI: C0025202
Disease: melanoma
melanoma
0.050 GeneticVariation BEFREE We found the disease-associated mutations p.R24P (8×), p.N71T (1×), p.G101W (1×), and p.V126D (1×) in the group with affected relatives and p.R24P (2×) in the group with several primary melanomas. 26225579

2015

dbSNP: rs104894098
rs104894098
CUI: C0025202
Disease: melanoma
melanoma
0.050 GeneticVariation BEFREE We compared the gene expression profile of SFs from FM individuals with two distinct CDKN2A/p16 mutations (V126D-p16 and R87P-p16) with the gene expression profile of SFs from age-matched individuals without p16 mutations and with no family history of melanoma. 23371019

2013

dbSNP: rs104894098
rs104894098
CUI: C0025202
Disease: melanoma
melanoma
0.050 GeneticVariation BEFREE Phenotypic characteristics of members of a melanoma prone kindred with a V126D CDKN2A gene mutation were monitored over approximately 15 y. Thirty-eight previously studied subjects were recruited. 15304099

2004

dbSNP: rs104894098
rs104894098
CUI: C0025202
Disease: melanoma
melanoma
0.050 GeneticVariation BEFREE The cellular activities of four melanoma-associated p16(INK4a) mutations (Arg24Pro, Ala36Pro, Met53Ile, and Val126Asp) were compared by use of inducible expression in stably transfected melanoma cells, deficient in expression of the endogenous protein, and compared with their ability to bind CDK4. 11595726

2001