Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8313
Gene Symbol: AXIN2
AXIN2
0.100 GeneticVariation disease BEFREE We analysed this novel AXIN2 mutant, together with two reported AXIN2 mutants [c.1966C>T (p.Arg656Stop) and c.1994delG (p.Leu688Stop)] that cause colorectal cancer with and without oligodontia, to study the effect of the mutant p.His660Tyr on the Wnt/β-catenin signaling pathway and to compare the molecular pathogenesis of different AXIN2 mutants in tooth agenesis and carcinogenesis. 27090353 2016
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Mutations in the MSX1 homeobox gene are associated with non-syndromic cleft palate and tooth agenesis in humans. 12163415 2002
Entrez Id: 2627
Gene Symbol: GATA6
GATA6
0.100 GeneticVariation disease BEFREE Induced pluripotent stem cells were created from a pancreas agenesis patient with a mutation in GATA6. 28196690 2017
Entrez Id: 8313
Gene Symbol: AXIN2
AXIN2
0.100 Biomarker disease BEFREE To date, the mutation spectra of non-syndromic form of familial and sporadic tooth agenesis in humans have revealed defects in various such genes that encode transcription factors, MSX1 and PAX9 or genes that code for a protein involved in canonical Wnt signaling (AXIN2), and a transmembrane receptor of fibroblast growth factors (FGFR1). 24121910 2014
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Despite the high frequency of tooth agenesis, there are as yet only a restricted number of mutations in MSX1 and PAX9 that have been associated with non-syndromic tooth agenesis. 22452934 2012
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE There is a statistically significant correlation between tooth agenesis and MSX1 mutation (P < 0.001). 17559452 2007
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE In this study, we investigated whether the 5 known tooth-agenesis-causing MSX1 missense mutations disrupt this Pax9-potentiation effect, or if they lead to deficiencies in protein stability, protein-protein interactions, nuclear translocation, and DNA-binding. 21297014 2011
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 Biomarker disease BEFREE Since MSX1 and PAX9 are linked to the pathogenesis of nonsyndromic tooth agenesis, we performed detailed mutational analysis of these two genes sampled from Japanese patients. 25101640 2014
Entrez Id: 2627
Gene Symbol: GATA6
GATA6
0.100 GeneticVariation disease BEFREE The novel mutation described in this case extends the list of GATA6 mutations causing pancreatic agenesis and cardiac malformations. 24433315 2015
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Our results for the first time demonstrates that mutations in MSX1 gene might play an important role in hypodontia cases involving pre-molars and is a risk factor for this ethnic population mainly of Arabs and is first report linking these mutations with tooth agenesis. 27365112 2016
Entrez Id: 8313
Gene Symbol: AXIN2
AXIN2
0.100 GeneticVariation disease BEFREE The presence of the variant A allele of AXIN2 rs2240308 is associated with frontal agenesis but not with lateral agenesis. 31781599 2019
Entrez Id: 2627
Gene Symbol: GATA6
GATA6
0.100 GeneticVariation disease BEFREE Mutations in GATA6 should be strongly considered in cases of diabetes due to pancreatic hypoplasia or agenesis, and potentially affected family members should be tested regardless of phenotype. 28049534 2017
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 Biomarker disease BEFREE Based on our observed defects in DNA binding by the mutant protein, we propose a loss-of-function mechanism that contributes to haploinsufficiency of PAX9 in this family with posterior tooth agenesis. 16479262 2006
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE We identified a novel frameshift mutation of the highly conserved C-terminal domain of MSX1, known as Msx homology domain 6 (MH6), in a Japanese family with non-syndromic tooth agenesis. 27917906 2016
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Our findings suggest that the nonsense mutation in MSX1 might have resulted in rapid degradation of the mutated transcript and caused the phenotype of tooth agenesis with cleft lip in the Chinese family. 22813217 2012
Entrez Id: 8313
Gene Symbol: AXIN2
AXIN2
0.100 GeneticVariation disease BEFREE In conclusion, tooth agenesis was associated with positive self-reported family history of cancer and with variants in AXIN2, FGF3, FGF10, and FGFR2. 23169889 2013
Entrez Id: 8313
Gene Symbol: AXIN2
AXIN2
0.100 GeneticVariation disease BEFREE Heterozygous mutations in AXIN2 have been shown to cause ectodermal dysplasia (including tooth agenesis, or more specifically, oligodontia), and, in some carriers, colorectal cancer and/or adenomatous polyposis develops. 30671715 2019
Entrez Id: 8313
Gene Symbol: AXIN2
AXIN2
0.100 Biomarker disease BEFREE A number of different genes have been shown to be associated with cases of tooth agenesis including AXIN2, IRF6, FGFR1, MSX1, PAX9, and TGFA. 29893310 2018
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE However, no significant differences were found in the allele frequency of IVS2-54 in the PAX9 polymorphism between controls and subjects with sporadic tooth agenesis. 25501211 2014
Entrez Id: 80326
Gene Symbol: WNT10A
WNT10A
0.100 GeneticVariation disease BEFREE Therefore, we hypothesized that EDA mutations interact with WNT10A mutations to play a role in tooth agenesis. 24312213 2013
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE To date, most MSX1 variants isolated from patients with tooth agenesis involve single amino acid substitutions in the highly conserved homeodomain or deletion mutants caused by frameshift or nonsense mutations. 26030286 2015
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE We have also identified families with tooth agenesis in whom PAX9 and MSX1 mutations have been excluded opening up the possibilities for the discovery of other genes that contribute to human tooth agenesis. 17651126 2007
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE The novel polymorphic variants within the paired box of the PAX9 gene are associated with selective tooth agenesis. 11374781 2001
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE To test the hypothesis that MSX1 mutations are a common cause of congenital tooth agenesis, we screened 92 affected individuals, representing 82 nuclear families, for mutations, using single-strand conformation analysis. 12097313 2002
Entrez Id: 80326
Gene Symbol: WNT10A
WNT10A
0.100 GeneticVariation disease BEFREE This study was designed to determine whether polymorphisms in the gene wingless-type MMTV integration site family, member 10A (WNT10A) are associated with non-syndromic hypodontia (tooth agenesis). 27050986 2016