Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 105375355
Gene Symbol: UPK3B
UPK3B
0.010 GeneticVariation disease BEFREE Previously, we showed that replacing endogenous p35 with the noncleavable mutant p35 (Δp35) attenuated amyloidosis and improved cognitive function in a familial Alzheimer's disease mouse model. 28912154 2017
Entrez Id: 8633
Gene Symbol: UNC5C
UNC5C
0.010 GeneticVariation disease BEFREE Furthermore, neurons expressing T835M UNC5C are more susceptible to cell death from multiple neurotoxic stimuli, including β-amyloid (), glutamate and staurosporine. 25419706 2014
Entrez Id: 8408
Gene Symbol: ULK1
ULK1
0.010 AlteredExpression disease BEFREE Ori decreased the LC3-II/I ratio, p62 and cathepsin D (Ctsd) protein levels and the number of autolysosomes, whereas the protein levels of Ulk1 and Beclin-1 were no different between the control and treatment groups, indicating increased autolysosome clearance and thus a decreased burden in the brain. 31243684 2019
Entrez Id: 114131
Gene Symbol: UCN3
UCN3
0.010 Biomarker disease BEFREE Abbreviations β<sub>2</sub>m β<sub>2</sub>-microglobulin 3D three dimensional AD Alzheimer's disease ADT AutoDock Tools DRA Dialysis-related amyloidosis DSSP dictionary of secondary structure of proteins FEL free energy landscape GROMACS GROningen MAchine for Chemical Simulations LGA Lamarckian Genetic Algorithm LINCS LINear Constraint Solver MC main chain MD molecular dynamics MHC-I major histocompatibility complex class I MM-PBSA molecular mechanics Poisson-Boltzmann surface area PME nanometer (nm); particle mesh ewald PCA principal component analysis PDB protein data bank <i>R</i><sub>g</sub> radius-of-gyration RSV rifamycin SV RMSD root-mean-square deviation RMSF root-mean-square fluctuation SC side chain SPC simple point charge SASA Solvent accessible surface area VMD visual molecular dynamics Communicated by Ramaswamy H. Sarma. 31526272 2019
Entrez Id: 7345
Gene Symbol: UCHL1
UCHL1
0.020 Biomarker disease BEFREE Ubiquitin hydrolase Uch-L1 rescues beta-amyloid-induced decreases in synaptic function and contextual memory. 16923396 2006
Entrez Id: 7345
Gene Symbol: UCHL1
UCHL1
0.020 Biomarker disease BEFREE Diverse cellular subsystems were involved in the penumbra tissue response: signal transduction pathways such as protein kinase Bα/GSK-3, protein kinase C and its β1 and β2 isoforms, Wnt/β-catenin (axin1, GSK-3, FRAT1), Notch/NUMB, DYRK1A, TDP43; mitochondria quality control (Pink1, parkin, HtrA2); ubiquitin-mediated proteolysis (ubiquilin-1, UCHL1); axon outgrowth and guidance (NAV-3, CRMP2, PKCβ2); vesicular trafficking (syntaxin-8, TMP21, Munc-18-3, synip, ALS2, VILIP1, syntaxin, synaptophysin, synaptotagmin); biosynthesis of neuromediators (tryptophan hydroxylase, monoamine oxidase B, glutamate decarboxylase, tyrosine hydroxylase, DOPA decarboxylase, dopamine transporter); intercellular interactions (N-cadherin, PMP22); cytoskeleton (neurofilament 68, neurofilament-M, doublecortin); and other proteins (LRP1, prion protein, β-amyloid). 27324898 2017
Entrez Id: 197131
Gene Symbol: UBR1
UBR1
0.010 Biomarker disease BEFREE Consequently, miR-H1-mediated Ubr1 silencing resulted in the accumulation of β-amyloid, which might contribute to the neurodegenerative pathogenesis enhanced by HSV-1. 29541932 2018
Entrez Id: 29979
Gene Symbol: UBQLN1
UBQLN1
0.020 Biomarker disease BEFREE Diverse cellular subsystems were involved in the penumbra tissue response: signal transduction pathways such as protein kinase Bα/GSK-3, protein kinase C and its β1 and β2 isoforms, Wnt/β-catenin (axin1, GSK-3, FRAT1), Notch/NUMB, DYRK1A, TDP43; mitochondria quality control (Pink1, parkin, HtrA2); ubiquitin-mediated proteolysis (ubiquilin-1, UCHL1); axon outgrowth and guidance (NAV-3, CRMP2, PKCβ2); vesicular trafficking (syntaxin-8, TMP21, Munc-18-3, synip, ALS2, VILIP1, syntaxin, synaptophysin, synaptotagmin); biosynthesis of neuromediators (tryptophan hydroxylase, monoamine oxidase B, glutamate decarboxylase, tyrosine hydroxylase, DOPA decarboxylase, dopamine transporter); intercellular interactions (N-cadherin, PMP22); cytoskeleton (neurofilament 68, neurofilament-M, doublecortin); and other proteins (LRP1, prion protein, β-amyloid). 27324898 2017
Entrez Id: 29979
Gene Symbol: UBQLN1
UBQLN1
0.020 AlteredExpression disease BEFREE Here, we have investigated ubiquilin-1 expression in human brain in relation to AD-related neurofibrillary pathology and the effects of ubiquilin-1 overexpression on BACE1, tau, neuroinflammation, and neuronal viability in vitro in co-cultures of mouse embryonic primary cortical neurons and microglial cells under acute neuroinflammation as well as neuronal cell lines, and in vivo in the brain of APdE9 transgenic mice at the early phase of the development of pathology. 26563932 2016
Entrez Id: 65264
Gene Symbol: UBE2Z
UBE2Z
0.010 Biomarker disease BEFREE Heroin Use Is Associated with AA-Type Kidney Amyloidosis in the Pacific Northwest. 29907621 2018
Entrez Id: 7306
Gene Symbol: TYRP1
TYRP1
0.020 GeneticVariation disease BEFREE Neuropathological findings in cerebral B-protein amyloidosis. Differences and similarities in those cases presenting as a cerebral hemorrhage and those presenting as a dementia of the Alzheimer type. 1320518 1992
Entrez Id: 7306
Gene Symbol: TYRP1
TYRP1
0.020 Biomarker disease BEFREE Amyloid B-protein/amyloid A4 is a peptide present in the neuritic plaques, neurofibrillary tangles and cerebrovascular deposits in patients with Alzheimer's disease and Down's syndrome (trisomy 21) and may be involved in the pathogenesis of Alzheimer's disease. 2893290 1988
Entrez Id: 7305
Gene Symbol: TYROBP
TYROBP
0.050 Biomarker disease BEFREE In addition, TREM2 interaction with its signaling adaptor DAP12 is enhanced by , regulating downstream phosphorylation of SYK and GSK3β. 29518356 2018
Entrez Id: 7305
Gene Symbol: TYROBP
TYROBP
0.050 Biomarker disease BEFREE Some modulatory effects of TYROBP on Alzheimer's-related genes were only apparent on a background of mice with cerebral amyloidosis due to overexpression of mutant APP/PSEN1. 28612290 2017
Entrez Id: 7305
Gene Symbol: TYROBP
TYROBP
0.050 Biomarker disease BEFREE Importantly, we show that constitutive absence of TYROBP/DAP12 in the amyloidosis mouse model prevented appearance of the electrophysiological and learning behavior alterations associated with the phenotype of APP<sup>KM670/671NL</sup>/PSEN1<sup>Δexon9</sup> mice. 30283032 2019
Entrez Id: 7305
Gene Symbol: TYROBP
TYROBP
0.050 Biomarker disease BEFREE Opposing effects of progranulin deficiency on amyloid and tau pathologies via microglial TYROBP network. 28070672 2017
Entrez Id: 7305
Gene Symbol: TYROBP
TYROBP
0.050 Biomarker disease BEFREE Correction: Integrative approach to sporadic Alzheimer's disease: deficiency of TYROBP in cerebral Aβ amyloidosis mouse normalizes clinical phenotype and complement subnetwork molecular pathology without reducing Aβ burden. 30464330 2019
Entrez Id: 7301
Gene Symbol: TYRO3
TYRO3
0.010 AlteredExpression disease BEFREE In THP-1 cells, co-stimulation with and flagellin for 24 h induced up-regulation of TYRO3 and GAS6, which could be prevented by neutralization of TLR5. 30852796 2019
Entrez Id: 10628
Gene Symbol: TXNIP
TXNIP
0.010 Biomarker disease BEFREE The chronic accumulation of inflammatory mediator in neuronal cells facilitates interactions of TXNIP-nucleotide binding oligomerization domain-like receptor family, pyrin domain containing 3 (NLRP3) and NLRP3-ASC, which increases β-amyloid () secretion. 29634349 2019
Entrez Id: 7295
Gene Symbol: TXN
TXN
0.020 Biomarker disease BEFREE Thioredoxin-80 protects against amyloid-beta pathology through autophagic-lysosomal pathway regulation. 31520067 2019
Entrez Id: 7295
Gene Symbol: TXN
TXN
0.020 Biomarker disease BEFREE Here, we explored the possibility that estrogen could protect cells against (1-42) toxicity by inhibiting the Ask1 cascade or by modulating Trx1. 22119000 2012
Entrez Id: 7276
Gene Symbol: TTR
TTR
0.500 GeneticVariation disease BEFREE The aim of the present study was to investigate if the type of amyloid fibril remains the same within ATTR Val30Met amyloidosis families. 30811423 2019
Entrez Id: 7276
Gene Symbol: TTR
TTR
0.500 Biomarker disease BEFREE Hereditary ATTR amyloidosis is an autosomal dominant genetic disorder with systemic deposition of amyloid fibrils induced by TTR gene mutation. 26306725 2015
Entrez Id: 7276
Gene Symbol: TTR
TTR
0.500 Biomarker disease BEFREE Hereditary transthyretin-mediated amyloidosis (hATTR amyloidosis) is a rare, life-threatening disease, caused by point mutations in the transthyretin gene. 31445300 2019
Entrez Id: 7276
Gene Symbol: TTR
TTR
0.500 Biomarker disease BEFREE Transthyretin (TTR) may alleviate AD symptom by reducing concentration in the brain. 27562180 2017