Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 9620
Gene Symbol: CELSR1
CELSR1
0.010 GeneticVariation disease BEFREE Of the six NTD cases, three spina bifida cases and one anencephaly case carried digenic variants in the CELSR1 and SCRIB gene; one anencephaly case carried variants in the CELSR1 and DVL3 gene; and one spina bifida case carried variants in the PTK7 and SCRIB genes. 29573971 2018
Entrez Id: 23513
Gene Symbol: SCRIB
SCRIB
0.010 GeneticVariation disease BEFREE Of the six NTD cases, three spina bifida cases and one anencephaly case carried digenic variants in the CELSR1 and SCRIB gene; one anencephaly case carried variants in the CELSR1 and DVL3 gene; and one spina bifida case carried variants in the PTK7 and SCRIB genes. 29573971 2018
Entrez Id: 1857
Gene Symbol: DVL3
DVL3
0.010 GeneticVariation disease BEFREE Of the six NTD cases, three spina bifida cases and one anencephaly case carried digenic variants in the CELSR1 and SCRIB gene; one anencephaly case carried variants in the CELSR1 and DVL3 gene; and one spina bifida case carried variants in the PTK7 and SCRIB genes. 29573971 2018
Entrez Id: 1946
Gene Symbol: EFNA5
EFNA5
0.200 Biomarker disease MGD Regulation of repulsion versus adhesion by different splice forms of an Eph receptor. 11089974 2000
Entrez Id: 10844
Gene Symbol: TUBGCP2
TUBGCP2
0.010 GeneticVariation disease BEFREE Segregation of data based on type of defect revealed an association between maternal 677T-allele and meningomyelocele (OR: 9.00, 95% CI: 3.77-21.55, P<0.0001) and an association between parental GCP II 1561T-allele and anencephaly (maternal: OR: 2.25, 95% CI: 1.12-4.50, P<0.05 and paternal: OR: 4.26, 95% CI: 2.01-9.09, P<0.001). 20047525 2010
Entrez Id: 2803
Gene Symbol: GOLGA4
GOLGA4
0.010 GeneticVariation disease BEFREE Segregation of data based on type of defect revealed an association between maternal 677T-allele and meningomyelocele (OR: 9.00, 95% CI: 3.77-21.55, P<0.0001) and an association between parental GCP II 1561T-allele and anencephaly (maternal: OR: 2.25, 95% CI: 1.12-4.50, P<0.05 and paternal: OR: 4.26, 95% CI: 2.01-9.09, P<0.001). 20047525 2010
Entrez Id: 6372
Gene Symbol: CXCL6
CXCL6
0.010 GeneticVariation disease BEFREE Segregation of data based on type of defect revealed an association between maternal 677T-allele and meningomyelocele (OR: 9.00, 95% CI: 3.77-21.55, P<0.0001) and an association between parental GCP II 1561T-allele and anencephaly (maternal: OR: 2.25, 95% CI: 1.12-4.50, P<0.05 and paternal: OR: 4.26, 95% CI: 2.01-9.09, P<0.001). 20047525 2010
Entrez Id: 2346
Gene Symbol: FOLH1
FOLH1
0.010 GeneticVariation disease BEFREE Segregation of data based on type of defect revealed an association between maternal 677T-allele and meningomyelocele (OR: 9.00, 95% CI: 3.77-21.55, P<0.0001) and an association between parental GCP II 1561T-allele and anencephaly (maternal: OR: 2.25, 95% CI: 1.12-4.50, P<0.05 and paternal: OR: 4.26, 95% CI: 2.01-9.09, P<0.001). 20047525 2010
Entrez Id: 4552
Gene Symbol: MTRR
MTRR
0.010 GeneticVariation disease BEFREE Significant increased risk of anencephaly was seen in MTRR variant rs326119 heterozygote (het) and homozygote (hom) individuals [odds ratios (OR)het = 1.81; ORhom = 2.05)]. 26045171 2015
Entrez Id: 574411
Gene Symbol: MIR451A
MIR451A
0.010 AlteredExpression disease BEFREE Specifically, of these validated miRNAs, miR-126, miR-198, and miR-451 were up-regulated, while miR-9, miR-212, miR-124, miR-138, and miR-103/107 were down-regulated in the tissues of fetuses with anencephaly. 19962448 2010
Entrez Id: 406994
Gene Symbol: MIR212
MIR212
0.010 Biomarker disease BEFREE Specifically, of these validated miRNAs, miR-126, miR-198, and miR-451 were up-regulated, while miR-9, miR-212, miR-124, miR-138, and miR-103/107 were down-regulated in the tissues of fetuses with anencephaly. 19962448 2010
Entrez Id: 27443
Gene Symbol: CECR2
CECR2
0.200 Biomarker disease MGD Strain-specific modifier genes of Cecr2-associated exencephaly in mice: genetic analysis and identification of differentially expressed candidate genes. 22045912 2012
Entrez Id: 5567
Gene Symbol: PRKACB
PRKACB
0.010 GeneticVariation disease BEFREE The gene polymorphism loci rs12132032 in PRKACB maybe a potential risk factor for anencephaly in Chinese population from Shanxi, while gender susceptibility may influence the correlation. 24294386 2013
Entrez Id: 28
Gene Symbol: ABO
ABO
0.010 Biomarker disease BEFREE The geographical correlation between the incidence of spina bifida and anencephaly and the HLA and ABO antigen frequencies are studied. 7008249 1980
Entrez Id: 8543
Gene Symbol: LMO4
LMO4
0.200 Biomarker disease MGD The Grainyhead-like epithelial transactivator Get-1/Grhl3 regulates epidermal terminal differentiation and interacts functionally with LMO4. 16949565 2006
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.440 GeneticVariation disease BEFREE The interaction of COMT rs737865 and MTHFR C677T was associated with an increased risk of NTDs, especially anencephaly, in a Chinese population with a high prevalence of NTDs. 24990354 2015
Entrez Id: 8543
Gene Symbol: LMO4
LMO4
0.200 Biomarker disease MGD The LIM domain-only protein LMO4 is required for neural tube closure. 15691703 2005
Entrez Id: 1312
Gene Symbol: COMT
COMT
0.010 GeneticVariation disease BEFREE There was a COMT rs737865 CC × MTHFR rs1801133 TT interaction for total NTDs (OR = 3.02, 95 % CI = 1.00-9.14) and for anencephaly (OR = 3.39, 95 % CI = 0.94-12.18). 24990354 2015
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.440 GeneticVariation disease BEFREE These preliminary data suggest that the 677C-->T polymorphism of the MTHFR gene is a risk factor for spina bifida and anencephaly that may provide a partial biologic explanation for why folic acid prevents these types of NTD. 8826441 1996
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.130 GeneticVariation disease BEFREE These preliminary data suggest that the 677C-->T polymorphism of the MTHFR gene is a risk factor for spina bifida and anencephaly that may provide a partial biologic explanation for why folic acid prevents these types of NTD. 8826441 1996
Entrez Id: 3106
Gene Symbol: HLA-B
HLA-B
0.010 GeneticVariation disease BEFREE To test the hypothesis that a locus in or near the human major histocompatibility complex (HLA) contributes to both involuntary fetal loss and neural tube defects (NTD), we evaluated sharing of antigens of the HLA-A, HLA-B, or HLA-DR loci of couples who had three or more first-trimester spontaneous abortions or who had a child with an NTD (myelomeningocele or anencephaly). 6594042 1984
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.010 Biomarker disease BEFREE To test whether Irf6 function in neurulation was conserved, we sequenced samples obtained from human cases of spina bifida and anencephaly. 30689861 2019
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.400 SusceptibilityMutation disease ORPHANET VANGL2 mutations in human cranial neural-tube defects. 20558380 2010
Entrez Id: 2191
Gene Symbol: FAP
FAP
0.010 GeneticVariation disease BEFREE We used the combined prevalence of spina bifida and anencephaly in selected countries before fortification, and estimated preventable child mortality associated with FAP SBA, assuming 0.5 per 1,000 live births as minimum achievable prevalence from mandatory fortification. 30070775 2019
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.130 Biomarker disease BEFREE We wanted to find out if the risk of isolated hydrocephalus was greater in families with NTD (anencephaly and spina bifida) from 424 families studied between 1975 and 1984 in Brittany. 2691919 1989