Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2272
Gene Symbol: FHIT
FHIT
0.030 AlteredExpression disease BEFREE FHIT gene expression in human urinary bladder transitional cell carcinomas. 11317523 2001
Entrez Id: 400566
Gene Symbol: C17orf97
C17orf97
0.100 AlteredExpression disease BEFREE CK 20 mRNA expression levels in tissue and urine were elevated in patients with urothelial carcinoma compared with the levels in healthy individuals. 15245962 2004
Entrez Id: 54474
Gene Symbol: KRT20
KRT20
0.100 AlteredExpression disease BEFREE CK 20 mRNA expression levels in tissue and urine were elevated in patients with urothelial carcinoma compared with the levels in healthy individuals. 15245962 2004
Entrez Id: 1620
Gene Symbol: BRINP1
BRINP1
0.030 Biomarker disease BEFREE DBCCR1 (deleted in bladder cancer chromosomal region 1) has been reported as the gene functionally affected by frequent loss of 9q32-33 in transitional cell carcinomas of the urinary bladder. 15643521 2005
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 AlteredExpression disease BEFREE HER2 protein overexpression and gene amplification in upper urinary tract transitional cell carcinoma: systematic analysis applying tissue microarray technique. 15667899 2005
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.400 Biomarker disease BEFREE FGFR3 seems to play an important role in transitional cell carcinoma development. 15701828 2005
Entrez Id: 11186
Gene Symbol: RASSF1
RASSF1
0.030 PosttranslationalModification disease BEFREE RASSF1A promoter methylation rates in the various types of fresh ovarian tissues were as follows: serous cystadenoma (1/5), serous tumor of borderline malignancy (2/7), serous adenocarcinoma (4/10), mucinous cystadenoma (0/5), mucinous tumor of borderline malignancy (2/7), mucinous adenocarcinoma (3/6), transitional-cell carcinoma (1/3), clear-cell carcinoma (3/3), and malignant müllerian mixed tumor (3/3). 16315018 2006
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.020 GeneticVariation disease BEFREE BCL6 gene mutations in transitional cell carcinomas. 17542409 2007
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.100 Biomarker disease BEFREE Vascular endothelial growth factor (VEGF), a positive regulator of angiogenesis, plays a pivotal role in tumor angiogenesis and shows a high expression in almost all known tumors, including transitional cell carcinoma (TCC) of the bladder. 17628298 2007
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.400 GeneticVariation disease BEFREE FGFR3 is frequently activated by mutation in urothelial carcinoma (UC) and represents a potential target for therapy. 17668422 2007
Entrez Id: 367
Gene Symbol: AR
AR
0.090 GeneticVariation disease BEFREE Androgen receptor gene polymorphism may affect the risk of urothelial carcinoma. 17922225 2008
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 AlteredExpression disease BEFREE HER2 overexpression and amplification in urothelial carcinoma of the bladder is associated with MYC coamplification in a subset of cases. 18628098 2008
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.400 GeneticVariation disease BEFREE TP53 mutational analysis supports monoclonal origin of biphasic sarcomatoid urothelial carcinoma (carcinosarcoma) of the urinary bladder. 18997737 2009
Entrez Id: 100187907
Gene Symbol: TRAP
TRAP
0.010 AlteredExpression disease BEFREE TRAP activity was positive in 100% of high grade urothelial carcinoma compared to low grade and 92% positive in invasive tumors compared to non invasive tumors. hTERT protein was detected in 75.4% of bladder cancer cases; there was a significant increase in the number of positive cases in schistosomal urothelial carcinoma and SCC compared to control and non schistosomal urothelial carcinoma (p<0.01 for each). hTERT was positive in 100% of high grade and invasive TCC. sFas was detected in 64.6% in bladder cancer cases; there was a significant increase in the number of positive cases in SCC compared to control and non-schistosomal urothelial carcinoma. 19272297 2009
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.030 Biomarker disease BEFREE SOX2 modulates alternative splicing in transitional cell carcinoma. 20138825 2010
Entrez Id: 4267
Gene Symbol: CD99
CD99
0.010 AlteredExpression disease BEFREE CD99 protein expression was determined by immunohistochemical staining in a series of 100 cases of transitional cell carcinomas (TCC) and 35 cases of normal urinary bladder tissues, and the methylation status of CD99 gene promoter was studied by using methylation-specific PCR and DNA sequencing. 20217126 2011
Entrez Id: 627
Gene Symbol: BDNF
BDNF
0.010 Biomarker disease BEFREE BDNF mediated TrkB activation is a survival signal for transitional cell carcinoma cells. 20428771 2010
Entrez Id: 7114
Gene Symbol: TMSB4X
TMSB4X
0.020 AlteredExpression disease BEFREE Thymosin β4 was highly expressed in the hepatic cells in the normal adult liver, duct, and acinar cells in pancreas, and muscle cells in the heart and also expressed highly in certain tumor cells, including osteosarcoma, colon adenocarcinoma, esophageal squamous cell carcinoma, kidney and urinary bladder transitional carcinoma, lung cancer, and liver cancer. 20975530 2011
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.400 GeneticVariation disease BEFREE FGFR3 appears to be the most frequently mutated oncogene in transitional cell carcinoma; its mutation is strongly associated with low tumor grade, early stage, and low recurrence rate, which confer a better overall prognosis. 21106220 2011
Entrez Id: 6241
Gene Symbol: RRM2
RRM2
0.010 AlteredExpression disease BEFREE RRM2 overexpression was associated significantly with muscularis propria invasion in UC patients who had undergone radical cystectomy (P=0.005). 21166702 2010
Entrez Id: 3371
Gene Symbol: TNC
TNC
0.010 AlteredExpression disease BEFREE Tenascin-C and fibronectin also showed significantly greater expression in MPV than in UC at the epithelial-mesenchymal interfaces. 22126379 2011
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.020 Biomarker disease BEFREE BRCA1-associated high-grade serous carcinomas had more frequent Solid, pseudoEndometrioid, and Transitional cell carcinoma-like morphology (SET features) (P=0.0045), higher mitotic indexes (P=0.012), more TILs (P=0.034), and either geographic or comedo necrosis (P=0.034). 22193042 2012
Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
0.090 GeneticVariation disease BEFREE PIK3CA mutation spectrum in urothelial carcinoma reflects cell context-dependent signaling and phenotypic outputs. 22430209 2013
Entrez Id: 51773
Gene Symbol: RSF1
RSF1
0.010 Biomarker disease BEFREE Rsf-1 protein was abundant in invasive urothelial carcinoma cells but was not benign. 22685262 2012
Entrez Id: 972
Gene Symbol: CD74
CD74
0.010 AlteredExpression disease BEFREE CD74 expression is increased in high-grade, invasive urothelial carcinoma of the bladder. 22905972 2013