Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE IRF6 polymorphisms in Brazilian patients with non-syndromic cleft lip with or without palate. 31495697 2019
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE These results suggest that IRF6 rs2235375 SNP play a major role in the pathogenesis and risk of developing non-syndromic cleft lip with or without palate. 28712851 2018
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 Biomarker disease BEFREE We identified several regions associated with subtype differentiation: cleft type differences in 8q24 (p = 1.00 × 10<sup>-4</sup> ), laterality differences in IRF6, a gene previously implicated with wound healing (p = 2.166 × 10<sup>-4</sup> ), sex differences and side of unilateral CL differences in FGFR2 (p = 3.00 × 10<sup>-4</sup> ; p = 6.00 × 10<sup>-4</sup> ), and sex differences in VAX1 (p < 1.00 × 10<sup>-4</sup> ) among others. 28762674 2017
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease GWASCAT Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate. 25775280 2015
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Mutations in IRF6 cause Van der Woude and popliteal pterygium syndrome and contribute to nonsyndromic cleft lip phenotypes but have not previously been associated with a PRS phenotype. 25441681 2015
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Association and Mutation Analyses of the IRF6 Gene in Families With Nonsyndromic and Syndromic Cleft Lip and/or Cleft Palate. 23394314 2014
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE IRF6 mutations are the major cause of VWS; however, variants in this gene show strong association with non-syndromic oral clefts, with a higher increased risk among cases with cleft lip only (CLO). 22440537 2012
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 Biomarker disease BEFREE IRF6 is a risk factor for nonsyndromic cleft lip in the Brazilian population. 22887868 2012
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734 2012
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE The Van der Woude syndrome is a mendelian CL/P, accounting for about 2% of all cases and caused by mutations in the interferon regulatory factor 6 (IRF6) gene, located on 1q32.2 chromosome. 19536562 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease GWASDB SNPs near two genes not previously associated with cleft lip with and without cleft palate (MAFB, most significant SNP rs13041247, with odds ratio (OR) per minor allele = 0.704, 95% CI 0.635-0.778, P = 1.44 x 10(-11); and ABCA4, most significant SNP rs560426, with OR = 1.432, 95% CI 1.292-1.587, P = 5.01 x 10(-12)) and two previously identified regions (at chromosome 8q24 and IRF6) attained genome-wide significance. 20436469 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Lack of association between IRF6 polymorphisms (rs2235371 and rs642961) and non-syndromic cleft lip and/or palate in a Brazilian population. 19780991 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Mutations in the interferon regulatory factor 6 (IRF6) gene are known to cause van der Woude syndrome (VWS), a common syndromic form of oro-facial clefting characterized by the familial occurrence of mixed clefting (cleft lip with or without a cleft palate and cleft palate alone in the same family) and lower lip pits. 21082654 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Mutations in Interferon Regulatory Factor 6 (IRF6) have been identified in two human allelic syndromes with cleft lip and/or palate: Van der Woude (VWS) and Popliteal Pterygium syndromes (PPS). 20196077 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE SNPs near two genes not previously associated with cleft lip with and without cleft palate (MAFB, most significant SNP rs13041247, with odds ratio (OR) per minor allele = 0.704, 95% CI 0.635-0.778, P = 1.44 x 10(-11); and ABCA4, most significant SNP rs560426, with OR = 1.432, 95% CI 1.292-1.587, P = 5.01 x 10(-12)) and two previously identified regions (at chromosome 8q24 and IRF6) attained genome-wide significance. 20436469 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Furthermore, to test whether rs642961 could modulate IRF6 expression in vivo, we surgically collected lip skin tissues within the adjacent region of lip cleft site and found rs642961 genotypes were associated with differential levels of IRF6 mRNA and protein expression in an allele-dosage manner, providing the first evidence that rs642961 affected IRF6 expression in vivo. 20799332 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 Biomarker disease CTD_human SNPs near two genes not previously associated with cleft lip with and without cleft palate (MAFB, most significant SNP rs13041247, with odds ratio (OR) per minor allele = 0.704, 95% CI 0.635-0.778, P = 1.44 x 10(-11); and ABCA4, most significant SNP rs560426, with OR = 1.432, 95% CI 1.292-1.587, P = 5.01 x 10(-12)) and two previously identified regions (at chromosome 8q24 and IRF6) attained genome-wide significance. 20436469 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Evidence of gene-environment interaction for the IRF6 gene and maternal multivitamin supplementation in controlling the risk of cleft lip with/without cleft palate. 20652317 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Mutations in IRF6 cause Van der Woude syndrome (VWS), one of the most common syndromes associated with cleft lip (CL) with or without cleft palate (CP). 20184620 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Further, results were phenotype dependent in that the IRF6 region results were most significant for families in which affected individuals have CL alone, and the FOXE1 region results were most significant in families in which some or all of the affected individuals have CL with CP. 19521098 2009
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE Association analysis between the IRF6 G820A polymorphism and nonsyndromic cleft lip and/or cleft palate in a Chinese population. 19115793 2009
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease LHGDN Linkage disequilibrium between IRF6 variants and nonsyndromic cleft lip/palate in the Chilean population. 18798331 2008
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 Biomarker disease BEFREE Disruption of an AP-2alpha binding site in an IRF6 enhancer is associated with cleft lip. 18836445 2008
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 Biomarker disease CTD_human Disruption of an AP-2alpha binding site in an IRF6 enhancer is associated with cleft lip. 18836445 2008
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 Biomarker disease BEFREE This study aimed to confirm the contribution of IRF6 to cleft lip with or without palate risk in additional Asian populations. 17438386 2007