Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 10736
Gene Symbol: SIX2
SIX2
0.010 GeneticVariation disease BEFREE The low penetrance of clefting in the Six2 null mouse combined with the mutation in one patient with cleft palate underscores the potential combinatorial interactions of other genes in clefting. 31765609 2020
Entrez Id: 100505887
Gene Symbol: LINC01672
LINC01672
0.010 AlteredExpression disease BEFREE This research is trying to clarify the underlying mechanism of the modulation of miRNA transcription during the formation of cleft palate by 7T and 9.4T NMR metabolomic platforms. 31770533 2020
Entrez Id: 6093
Gene Symbol: ROCK1
ROCK1
0.010 Biomarker disease BEFREE ROCK1 is associated with non-syndromic cleft palate. 31715657 2020
Entrez Id: 4087
Gene Symbol: SMAD2
SMAD2
0.010 AlteredExpression disease BEFREE SMAD2 overexpression rescues the TGF-β3 null mutant mice cleft palate by increased apoptosis. 31677482 2020
Entrez Id: 406899
Gene Symbol: MIR106A
MIR106A
0.010 Biomarker disease BEFREE MiR-106a-5p modulates apoptosis and metabonomics changes by TGF-β/Smad signaling pathway in cleft palate. 31770533 2020
Entrez Id: 6647
Gene Symbol: SOD1
SOD1
0.010 AlteredExpression disease BEFREE Mitochondrial reactive oxygen species (ROS) levels were significantly higher in CLPs than in CTRLs and were associated with lower mRNA expression levels of superoxide dismutase 1 (SOD1) and decreased cell mobility. 31202461 2019
Entrez Id: 100616113
Gene Symbol: MIR4680
MIR4680
0.010 Biomarker disease BEFREE Our results indicate that miR-374a-5p, miR-4680-3p, and miR-133b regulate expression of genes that are involved in the etiology of human CP, providing insight into the association between CP-associated genes and potential targets of miRNAs in palate development. 31262291 2019
Entrez Id: 22915
Gene Symbol: MMRN1
MMRN1
0.010 GeneticVariation disease BEFREE This article will review the known ECM constituents at each stage of palatogenesis, the mechanisms of tissue reorganization and cell migration through the palatal ECM, the reciprocal relationship between the ECM and gene expression, and human syndromes with cleft palate that arise from mutations of ECM proteins and their regulators.Anat Rec, 2019. 31513730 2019
Entrez Id: 2735
Gene Symbol: GLI1
GLI1
0.010 AlteredExpression disease BEFREE Then we observed by consulting a vast amount of literature that specific knockout of the Kif3a also induced lateral cleft palate and expended the expression domains of Shh and Gli1 during palate development. 31010494 2019
Entrez Id: 11127
Gene Symbol: KIF3A
KIF3A
0.010 AlteredExpression disease BEFREE Then we observed by consulting a vast amount of literature that specific knockout of the Kif3a also induced lateral cleft palate and expended the expression domains of Shh and Gli1 during palate development. 31010494 2019
Entrez Id: 81037
Gene Symbol: CLPTM1L
CLPTM1L
0.010 Biomarker disease BEFREE Cleft palate transmembrane protein 1 (Clptm1) and its paralog protein, Cisplatin resistance-related protein 9 (CRR9) constitute a highly conserved protein family, from Caenorhabditis elegans to Homo sapiens. 30635792 2019
Entrez Id: 8100
Gene Symbol: IFT88
IFT88
0.010 GeneticVariation disease BEFREE IFT88 (intraflagellar transport 88) has been suggested to play a major role in craniofacial development, as Ift88 mutant mice exhibit cleft palate and mutations in IFT88 were identified in individuals with NSCLP. 30953423 2019
Entrez Id: 56999
Gene Symbol: ADAMTS9
ADAMTS9
0.010 Biomarker disease BEFREE We provide strong genetic and biochemical evidence that hydrocephaly and white spotting in B3glct mutants resulted from loss of ADAMTS20, eye abnormalities from partial reduction of ADAMTS9, and cleft palate from loss of ADAMTS20 and partially reduced ADAMTS9 function. 31600785 2019
Entrez Id: 27086
Gene Symbol: FOXP1
FOXP1
0.010 GeneticVariation disease BEFREE We discovered a significant association between CP and a branchial arch enhancer near FOXP1 (mm60; p-value = .0002). 30582786 2019
Entrez Id: 635
Gene Symbol: BHMT
BHMT
0.010 GeneticVariation disease BEFREE For example, BHMT displayed a 10-fold increase in protein-altering variants in CLP cases (p = .03), including multiple case occurrences of a rare frameshift mutation (K400 fs). 31063268 2019
Entrez Id: 442890
Gene Symbol: MIR133B
MIR133B
0.010 Biomarker disease BEFREE Our results indicate that miR-374a-5p, miR-4680-3p, and miR-133b regulate expression of genes that are involved in the etiology of human CP, providing insight into the association between CP-associated genes and potential targets of miRNAs in palate development. 31262291 2019
Entrez Id: 8823
Gene Symbol: FGF16
FGF16
0.010 PosttranslationalModification disease BEFREE DNA hypermethylation of Fgf16 and Tbx22 associated with cleft palate during palatal fusion. 31596367 2019
Entrez Id: 2615
Gene Symbol: LRRC32
LRRC32
0.010 GeneticVariation disease BEFREE Homozygous stop-gain variant in LRRC32, encoding a TGFβ receptor, associated with cleft palate, proliferative retinopathy, and developmental delay. 30976112 2019
Entrez Id: 4907
Gene Symbol: NT5E
NT5E
0.010 Biomarker disease BEFREE Four patients, who were diagnosed with velopharyngeal dysfunction without cleft palate at ENT clinic of the National Hospital Organization, Tokyo Medical Center, participated in this study. 31530426 2019
Entrez Id: 6295
Gene Symbol: SAG
SAG
0.010 Biomarker disease BEFREE Consistent with these findings, the incidence of CP in association with excessive RA signaling was reduced by administration of the Shh signaling agonist SAG (Smoothened agonist). 31591086 2019
Entrez Id: 4092
Gene Symbol: SMAD7
SMAD7
0.010 AlteredExpression disease BEFREE Finally, we identified the NONMMUT034790.2-LEF1-SMAD7 co-expression trans-regulatory network that might be associated with CP. 30548829 2019
Entrez Id: 80070
Gene Symbol: ADAMTS20
ADAMTS20
0.010 Biomarker disease BEFREE We provide strong genetic and biochemical evidence that hydrocephaly and white spotting in B3glct mutants resulted from loss of ADAMTS20, eye abnormalities from partial reduction of ADAMTS9, and cleft palate from loss of ADAMTS20 and partially reduced ADAMTS9 function. 31600785 2019
Entrez Id: 442919
Gene Symbol: MIR374A
MIR374A
0.010 Biomarker disease BEFREE MicroRNA-374a, -4680, and -133b suppress cell proliferation through the regulation of genes associated with human cleft palate in cultured human palate cells. 31262291 2019
Entrez Id: 23543
Gene Symbol: RBFOX2
RBFOX2
0.010 AlteredExpression disease BEFREE Here, we demonstrate that splicing factor Rbfox2 is expressed in the neural crest cells (NCCs), and deletion of <i>Rbfox2</i> in NCCs leads to cleft palate and defects in craniofacial bone development. 31241461 2019
Entrez Id: 6934
Gene Symbol: TCF7L2
TCF7L2
0.010 Biomarker disease BEFREE The methylation status of enhancer regions of HDAC4, PDGFRB, and TCF7L2, involved in the regulation of the EMT during palatal fusion, may enlighten the development of novel epigenetic biomarkers in the treatment of cleft palate. 29608334 2018