Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 24
Gene Symbol: ABCA4
ABCA4
0.110 GeneticVariation disease BEFREE SNPs near two genes not previously associated with cleft lip with and without cleft palate (MAFB, most significant SNP rs13041247, with odds ratio (OR) per minor allele = 0.704, 95% CI 0.635-0.778, P = 1.44 x 10(-11); and ABCA4, most significant SNP rs560426, with OR = 1.432, 95% CI 1.292-1.587, P = 5.01 x 10(-12)) and two previously identified regions (at chromosome 8q24 and IRF6) attained genome-wide significance. 20436469 2010
Entrez Id: 24
Gene Symbol: ABCA4
ABCA4
0.110 GeneticVariation disease GWASCAT Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate. 28054174 2017
Entrez Id: 24
Gene Symbol: ABCA4
ABCA4
0.110 GeneticVariation disease GWASCAT Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity. 28232668 2017
Entrez Id: 91452
Gene Symbol: ACBD5
ACBD5
0.300 Biomarker disease GENOMICS_ENGLAND
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.100 Biomarker disease HPO
Entrez Id: 72
Gene Symbol: ACTG2
ACTG2
0.100 Biomarker disease HPO
Entrez Id: 51816
Gene Symbol: ADA2
ADA2
0.100 Biomarker disease HPO
Entrez Id: 80070
Gene Symbol: ADAMTS20
ADAMTS20
0.010 Biomarker disease BEFREE We provide strong genetic and biochemical evidence that hydrocephaly and white spotting in B3glct mutants resulted from loss of ADAMTS20, eye abnormalities from partial reduction of ADAMTS9, and cleft palate from loss of ADAMTS20 and partially reduced ADAMTS9 function. 31600785 2019
Entrez Id: 56999
Gene Symbol: ADAMTS9
ADAMTS9
0.010 Biomarker disease BEFREE We provide strong genetic and biochemical evidence that hydrocephaly and white spotting in B3glct mutants resulted from loss of ADAMTS20, eye abnormalities from partial reduction of ADAMTS9, and cleft palate from loss of ADAMTS20 and partially reduced ADAMTS9 function. 31600785 2019
Entrez Id: 177
Gene Symbol: AGER
AGER
0.010 AlteredExpression disease BEFREE These findings indicate that reduced levels of RAGE and epiregulin in AF are correlated to chemically induced cleft palate in mice. 28282589 2017
Entrez Id: 54806
Gene Symbol: AHI1
AHI1
0.100 Biomarker disease HPO
Entrez Id: 196
Gene Symbol: AHR
AHR
0.010 Biomarker disease BEFREE Dioxin (2,3,7,8-tetrachlorodibenzo-p-dioxin) induces cleft palate and hydronephrosis in mice, when exposed in utero; these effects are mediated by the aryl hydrocarbon receptor. 16636061 2006
Entrez Id: 8092
Gene Symbol: ALX1
ALX1
0.100 Biomarker disease HPO
Entrez Id: 257
Gene Symbol: ALX3
ALX3
0.100 Biomarker disease HPO
Entrez Id: 139285
Gene Symbol: AMER1
AMER1
0.400 Biomarker disease GENOMICS_ENGLAND
Entrez Id: 139285
Gene Symbol: AMER1
AMER1
0.400 Biomarker disease HPO
Entrez Id: 347902
Gene Symbol: AMIGO2
AMIGO2
0.010 Biomarker disease BEFREE Among these, it is hypothesized that haploinsufficiency of AMIGO2 is potentially responsible for the mental retardation of this patient, and of COL2A1 for the cleft palate and high myopia. 20933621 2011
Entrez Id: 9949
Gene Symbol: AMMECR1
AMMECR1
0.100 Biomarker disease HPO
Entrez Id: 29123
Gene Symbol: ANKRD11
ANKRD11
0.100 Biomarker disease HPO
Entrez Id: 3730
Gene Symbol: ANOS1
ANOS1
0.100 Biomarker disease HPO
Entrez Id: 372
Gene Symbol: ARCN1
ARCN1
0.100 Biomarker disease HPO
Entrez Id: 9411
Gene Symbol: ARHGAP29
ARHGAP29
0.300 Biomarker disease GENOMICS_ENGLAND A multi-ethnic genome-wide association study identifies novel loci for non-syndromic cleft lip with or without cleft palate on 2p24.2, 17q23 and 19q13. 27033726 2016
Entrez Id: 57514
Gene Symbol: ARHGAP31
ARHGAP31
0.100 Biomarker disease HPO
Entrez Id: 8289
Gene Symbol: ARID1A
ARID1A
0.100 Biomarker disease HPO
Entrez Id: 57492
Gene Symbol: ARID1B
ARID1B
0.100 Biomarker disease HPO