Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 Biomarker disease BEFREE Genetic variants in COL2A1, COL11A2, and IRF6 contribute risk to nonsyndromic cleft palate. 20672350 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 GeneticVariation disease BEFREE Mutations in IRF6 cause Van der Woude syndrome (VWS), one of the most common syndromes associated with cleft lip (CL) with or without cleft palate (CP). 20184620 2010
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 GeneticVariation disease BEFREE Further, results were phenotype dependent in that the IRF6 region results were most significant for families in which affected individuals have CL alone, and the FOXE1 region results were most significant in families in which some or all of the affected individuals have CL with CP. 19521098 2009
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 GeneticVariation disease BEFREE Association analysis between the IRF6 G820A polymorphism and nonsyndromic cleft lip and/or cleft palate in a Chinese population. 19115793 2009
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 GeneticVariation disease BEFREE Recently, we have demonstrated that mice homozygous for a mutation in Irf6 exhibit abnormalities of epithelial differentiation that results in cleft palate as a consequence of adhesion between the palatal shelves and the tongue. 19439425 2009
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 AlteredExpression disease BEFREE Similarly, Irf6 was found to be down-regulated in the medial edge epithelia of transforming growth factor beta3-null mice, which also exhibit cleft palate. 16245336 2006
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 Biomarker disease CTD_human Abnormal skin, limb and craniofacial morphogenesis in mice deficient for interferon regulatory factor 6 (Irf6). 17041601 2006
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 GeneticVariation disease LHGDN Interferon regulatory factor 6 (IRF6) gene variants and the risk of isolated cleft lip or palate. 15317890 2004
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 GeneticVariation disease BEFREE Van der Woude syndrome (VWS, OMIM 119300) is an autosomal dominant craniofacial disorder characterized by pits of the lower lip, hypodontia, and cleft lip and/or cleft palate. 12920575 2003
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 GeneticVariation disease BEFREE Our results suggest that a gene at 17p11.2-11.1, together with the VWS gene at 1p32-41, enhances the probability of CP in an individual carrying the two at-risk genes. 10417286 1999
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 Biomarker disease HPO
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.700 Biomarker disease GENOMICS_ENGLAND
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.640 Biomarker disease BEFREE Among these, it is hypothesized that haploinsufficiency of AMIGO2 is potentially responsible for the mental retardation of this patient, and of COL2A1 for the cleft palate and high myopia. 20933621 2011
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.640 GeneticVariation disease BEFREE Overall, 20 of 23 sporadic patients with a COL2A1 mutation had either a cleft palate or retinal detachment with vitreous anomalies. 20179744 2010
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.640 GeneticVariation disease BEFREE Regarding unique symptoms in each case, congenital fibrosis of the extraocular muscles found only in Case 1 may be caused by KIF21A deletion and hearing loss and cleft palate in Case 2 by COL2A1 defect. 15362574 2004
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.640 Biomarker disease CTD_human Abnormal craniofacial development and expression patterns of extracellular matrix components in transgenic Del1 mice harboring a deletion mutation in the type II collagen gene. 15562585 2004
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.640 Biomarker disease BEFREE Mutations in genes coding for cartilage collagens II and XI, COL2A1, COL11A1 and COL11A2, have been shown to cause chondrodysplasias that are commonly associated with Robin sequence, micrognathia or cleft palate. 12673280 2003
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.640 Biomarker disease GENOMICS_ENGLAND Stop codon in the procollagen II gene (COL2A1) in a family with the Stickler syndrome (arthro-ophthalmopathy). 1677770 1991
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.640 Biomarker disease HPO
Entrez Id: 23327
Gene Symbol: NEDD4L
NEDD4L
0.620 GeneticVariation disease BEFREE Thus, the title should read "A missense mutation in the HECT domain of NEDD4L identified in a girl with periventricular nodular heterotopia, polymicrogyria, and cleft palate." 31028281 2019
Entrez Id: 23327
Gene Symbol: NEDD4L
NEDD4L
0.620 GeneticVariation disease BEFREE A novel missense mutation in the HECT domain of NEDD4L identified in a girl with periventricular nodular heterotopia, polymicrogyria and cleft palate. 28515470 2017
Entrez Id: 23327
Gene Symbol: NEDD4L
NEDD4L
0.620 Biomarker disease GENOMICS_ENGLAND Here we show that missense mutations in NEDD4L mapping to the HECT domain of the encoded E3 ubiquitin ligase lead to PNH associated with toe syndactyly, cleft palate and neurodevelopmental delay. 27694961 2016
Entrez Id: 23327
Gene Symbol: NEDD4L
NEDD4L
0.620 Biomarker disease CTD_human Here we show that missense mutations in NEDD4L mapping to the HECT domain of the encoded E3 ubiquitin ligase lead to PNH associated with toe syndactyly, cleft palate and neurodevelopmental delay. 27694961 2016
Entrez Id: 23327
Gene Symbol: NEDD4L
NEDD4L
0.620 Biomarker disease HPO
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.500 GeneticVariation disease BEFREE Association between CDH1 and MSX1 gene polymorphisms and the risk of nonsyndromic cleft lip and/or cleft palate in a southeast Iranian population. 23231047 2013