Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.460 GeneticVariation disease BEFREE PSCA rs2294008 C-allele was associated with per allele OR of 1.34 (95% CI, 1.18-1.51; P=2.28×10<sup>-6</sup>) for the risk of DU. 31839644 2019
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.460 GeneticVariation disease BEFREE Frequency of PSCA rs2294008 C/C genotype in duodenal ulcer was 36.1%, which was significantly higher than those with gastric cancer (12.4%), gastric ulcer (19.0%), gastritis (10.7%), and H. pylori-negatives (19.5%) (p < .001). 25582162 2015
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.460 GeneticVariation disease BEFREE Recently, three genome-wide association studies have identified the PSCA (prostate stem cell antigen) rs2294008 polymorphism (C > T) associated with susceptibility to gastric cancer, bladder cancer, and duodenal ulcers, highlighting its critical role in disease pathogenesis. 27001215 2016
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.460 GeneticVariation disease BEFREE From these results we conclude that the PSCA rs2294008 polymorphism is involved in the susceptibility to GC and DU, as well as in the prognosis of the diffuse-type of GC in Caucasians. 25721731 2015
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.460 GeneticVariation disease BEFREE Recently we conducted the genome wide association study for duodenal ulcer and identified disease susceptibility variations at two genetic loci corresponding to the Prostate stem cell antigen (PSCA) gene and the ABO blood group (ABO) gene. 23704932 2013
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.460 GeneticVariation disease BEFREE The C allele of rs2294008 at PSCA was associated with increased risk of duodenal ulcer (odds ratio (OR) = 1.84; P = 3.92 × 10(-33)) in a recessive model but was associated with decreased risk of gastric cancer (OR = 0.79; P = 6.79 × 10(-12)), as reported previously. 22387998 2012
Entrez Id: 28
Gene Symbol: ABO
ABO
0.430 GeneticVariation disease BEFREE Recently we conducted the genome wide association study for duodenal ulcer and identified disease susceptibility variations at two genetic loci corresponding to the Prostate stem cell antigen (PSCA) gene and the ABO blood group (ABO) gene. 23704932 2013
Entrez Id: 28
Gene Symbol: ABO
ABO
0.430 Biomarker disease BEFREE Hereditary aspects of duodenal ulceration: pepsin 1 secretion in relation to ABO blood groups and ABH secretor status. 119857 1979
Entrez Id: 28
Gene Symbol: ABO
ABO
0.430 GeneticVariation disease BEFREE The T allele of rs2294008 encodes a translation initiation codon upstream of the reported site and changes protein localization from the cytoplasm to the cell surface. rs505922 at ABO was also associated with duodenal ulcer in a recessive model (OR = 1.32; P = 1.15 × 10(-10)). 22387998 2012
Entrez Id: 5321
Gene Symbol: PLA2G4A
PLA2G4A
0.410 GeneticVariation disease BEFREE Bleeding diathesis and gastro-duodenal ulcers in inherited cytosolic phospholipase-A2 alpha deficiency. 25102815 2014
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.320 GeneticVariation disease BEFREE Our results show that the TGFB1 T+869C gene polymorphism is involved in the susceptibility to DU and provide further evidence that host genetic factors play a key role in the pathogenesis of H. pylori-related diseases. 16971953 2006
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.320 GeneticVariation disease BEFREE A significant difference (P = 0.04) in the distribution of rare haplotypes of the TGF-beta1 gene between patients with duodenal ulcer and healthy controls has been found. 17376051 2007
Entrez Id: 1080
Gene Symbol: CFTR
CFTR
0.210 AlteredExpression disease BEFREE H. pylori infection downregulates duodenal epithelial cellular CFTR and SLC26A6 expressions through TGFβ-mediated P38 MAPK signaling pathway, which contributes to further elucidating the pathogenesis of H. pylori-associated duodenal ulcer. 30119655 2018
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.210 GeneticVariation disease BEFREE The G1612A(rs10434) and C936T(rs3025039) polymorphisms in the 3' untranslated region (3'-UTR) of VEGF gene were genotyped in a total of 844 subjects including 385 GC, 143 ulcer including 98 gastric ulcer (GU), 45 duodenal ulcer (DU), and 316 nonulcer subjects. 19496079 2009
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE Furthermore, the expression of cagA mRNA was confirmed by RT-PCR for the representative strains from both DU and NUD/AV subjects indicating the active cagA promoter regions of these strains. 21195664 2011
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 Biomarker disease BEFREE Our data indicate that H. pylori infection and IL-1RN*2 synergistically determine susceptibility to duodenal ulcer. 15610073 2004
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE Although the cagA gene sequence was completely identical between the gastric corpus and the antrum in all patients, the corpus gastritis was more prominent in patients with gastric cancer than those with duodenal ulcer. 16543737 2006
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE In addition, the simultaneous carriage of IL-1RN*2, IL-1B-511*C, IL-1B-31*T and IL-1B + 3954*C alleles was a genetic risk factor for DU in patients with H. pylori infection (OR: 3.22; 95%CI = 1.09-9.47). 14632761 2003
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE The CagA protein of Helicobacter pylori is an immunogenic antigen of variable size and unknown function that has been associated with increased virulence as well as two mutually exclusive diseases, duodenal ulcer and gastric carcinoma. 9666002 1998
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE Logistic regression identified H. pylori infection and NSAIDs use as independent risk factors for peptic ulcer diseases whereas the simultaneous carriage of IL-1B(+3954) allele 2 and IL-1RN allele 2 was associated with reduced risk for duodenal ulcer disease (OR: 0.37, 95% CI = 0.14-0.9). 11531943 2001
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE Three hundred and ninety-nine patients with gastroduodenal diseases (129 chronic gastritis, 127 duodenal ulcer and 143 non-cardiac gastric cancer) and 264 healthy controls were genotyped for IL-1B-511 and IL-1RN gene polymorphisms by the PCR-RFLP method. 17295877 2007
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE However, in 8 (18%) of the cases, more than one subtype was present, and an association between patients with multiple subtypes and disease outcome was observed when compared to patients with isolated subtypes (P = 0.048). cagA was a marker of H. pylori strains for duodenal ulcer disease in our population, and in spite of the differences in the 3' region of the cagA gene, the Japanese methodology was able to detect the cagA status in most cases. 11158115 2001
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 Biomarker disease BEFREE Because gastric cancer and duodenal ulcer are mutually exclusive outcomes of Helicobacter pylori infection, we aimed to investigate possible allelic variant associations of several functional polymorphisms in the IL-1B, IL-1RN, TNFA, and LTA genes in the susceptibility to duodenal ulcer. 16164697 2005
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE CagA gene was positively associated with DU and GU (P<0.01, P<0.02), but not with NUD (P>0.05). 12854168 2003
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE Similarly, IL-1RN*2 was not a risk genotype for either gastric cancer or duodenal ulcer. 12788304 2003