Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 AlteredExpression disease BEFREE However, increasing age, male sex, and IL1RN*2 were independently associated with duodenal ulcer. 16183821 2005
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE Histology revealed the presence of infection in 68% of cases of mild/chronic nonspecific gastritis with others belonging to the GU sequel. cagA gene carriage was observed in 104 (51%) cases or mostly from DU, GU and GC groups, of which 97 were Western type strains while 3 were East-Asian type strains that are rarely observed in South Asia. vacA allelic variant s1am1 was most commonly observed, followed by s1am2, and s1bm1, with direct correlation in diseased cases (gastritis, GU, DU and GC). 23493000 2013
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE The cagA gene was detected in 100% of 16 Helicobacter pylori isolates from patients with gastric carcinoma versus 78% of 18 isolates from patients with duodenal ulcers (P = 0.344) and only 64% of 22 isolates from patients with gastritis only (P = 0.005) in Brazil. 9774617 1998
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE The TPMs and 3' region structures of the H. pylori CagA gene in the duodenal ulcer and gastric adenocarcinoma patients have no significant differences. 23464450 2012
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE The cagA gene was detected in 80% of patients with DU and in 52% of those with gastritis (P < 0.0001). 10499473 1999
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE In resume there was a strong association between the H. pylori cagA+ gene and DU. 14595461 2003
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE This does not support the view that subtypes of the 3' region of cagA gene in H. pylori isolated from Iran correlate with the clinical outcomes of H. pylori, but colonization with cagA positive strains was significantly higher among duodenal ulcer than gastritis patients in Iran. 18612816 2009
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE In the present study, 310 individuals from Eastern India were subjected to a case-control study to determine the IL1B and IL1RN risk genotypes to H. pylori mediated duodenal ulcer. 16550552 2006
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE Genomic DNA was amplified by PCR, using synthetic oligonucleotide primers to the cagA gene to determine the prevalence of the cagA gene in 60 H. pylori isolates obtained from well-documented duodenal ulcer or asymptomatic gastritis patients (30 each). 9398887 1996
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 Biomarker disease BEFREE These findings show that no evidence for the involvement of a proinflammatory polymorphism in the IL-1Beta-511, IL-1RN and TNF-A-308 in the susceptibility to DU in China. 19804405 2010
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE IL-1B-511, IL-1RN, and IL-2 genetic polymorphisms were not important contributors to the pathogenesis of GU, GC, and DU in Korean patients. 18761558 2008
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE Moreover, our findings indicated that serum concentrations of IL-18 were influenced by CagA factor, irrespective of the VacA status, suggesting that high levels of IL-18 in CagA-positive subjects predisposes to susceptibility to DU. 23746337 2013
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE In this study, the cagA gene was detected in H. pylori isolates from 26 (81.3%) of 32 patients with duodenal ulcers (DU), 17 (68.0%) of 25 patients with gastric ulcers, and 23 (59.0%) of 39 patients with nonulcer dyspepsia (NUD). 7650174 1995
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE The vacA s1a genotype was detected in 66.7, 96.4, and 87.9% of isolates from patients with NUD, DU, and GC, respectively, and its presence was significantly associated with that of DU (p = .004), GC (p = .043), and cagA gene (p = .021). 17083380 2006
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE The presence of the cagA gene was significantly associated with duodenal ulcer (p<0.05). 25228509 2014
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE We examined the diversity of vacA and cagA genes in 143 isolates obtained from patients with duodenal ulcer or chronic gastritis in East Asia (two different areas of Japan, Fukui and Okinawa, and also in Hangzhou, China) by polymerase chain reaction (PCR) and sequence analysis. 14734191 2004
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE Carriage of IL-1RN allele 2 significantly protected against DU disease while the IL-1B-511 T/T genotype significantly protected against DU recurrence in patients older than 60 years. 12105837 2002
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE We studied 144 patients with non-cardia gastric cancer (NCGC)(41/50 with present or past H. pylori infection), 75 with duodenal ulcer (DU)(66 H. pylori infected) and 171 with gastritis (CG)(107 H. pylori infected). cagA gene was present in 24/28 NCGC, 45/59 DU and 56/107 CG. 18179773 2008
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 Biomarker disease BEFREE In conclusion, our meta-analysis suggests that there is no evidence of significant association between IL-1RN VNTR and DU with or without Helicobacter pylori infection in overall population, whereas significant association is found by subgroup analyses which showed protective effect of IL-1RN allele 2 against DU risk in Caucasian population. 23800434 2013
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.090 Biomarker disease BEFREE All case-control studies investigating the association between TNF-α SNPs and DU risk were included. 23451177 2013
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.090 GeneticVariation disease BEFREE Interleukin 1beta polymorphisms increase risk of hypochlorhydria and atrophic gastritis and reduce risk of duodenal ulcer recurrence in Japan. 12105837 2002
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.090 AlteredExpression disease BEFREE In the IgG-positive, IgA-low group, the rate of peptic ulcers (especially duodenal ulcers) in endoscopic findings was higher (P < 0.05); the score of activity and the density of H. pylori were higher (P < 0.001 and P < 0.05, respectively); the score of metaplasia was lower (P < 0.05); and the level of interleukin-1 beta was lower (P < 0.05) than in the IgG-positive, IgA-high group. 9407330 1997
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.090 GeneticVariation disease BEFREE Polymorphisms in TNF and HSP-70 show a significant association with gastric cancer and duodenal ulcer. 19626584 2010
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.090 GeneticVariation disease BEFREE Duodenal ulcer was more frequent in TNF-A -857 TT and in IL-1RN 1,2 subjects. 15652446 2005
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.090 GeneticVariation disease BEFREE Our data show no association between allelic variants of IL-1 and TNF gene polymorphisms in the susceptibility to and final outcome of duodenal ulcer. 16164697 2005