Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3146
Gene Symbol: HMGB1
HMGB1
0.020 Biomarker disease BEFREE SLE NETs contain DNA as well as large amounts of LL37 and HMGB1, neutrophil proteins that facilitate the uptake and recognition of mammalian DNA by plasmacytoid DCs (pDCs). 21389264 2011
Entrez Id: 3663
Gene Symbol: IRF5
IRF5
0.100 GeneticVariation disease BEFREE SLE-associated IRF5 haplotypes were correlated with the expression data and with the best cis-regulatory models. 21627826 2011
Entrez Id: 57819
Gene Symbol: LSM2
LSM2
0.010 Biomarker disease BEFREE SLE-related autoantibodies have unique patterns of diversification to linked proteins such as the snRNP particle and the diversification takes years before clinical diagnosis. 21632208 2011
Entrez Id: 3663
Gene Symbol: IRF5
IRF5
0.100 Biomarker disease BEFREE SLE serum was identified as a trigger for IRF-5 nuclear accumulation; however, neither IFNα nor SLE immune complexes could induce nuclear localization. 21968701 2012
Entrez Id: 7852
Gene Symbol: CXCR4
CXCR4
0.010 AlteredExpression disease BEFREE SLE leukocytes displayed reduced levels of CXCR4 and CXCR7 transcripts. 23244336 2012
Entrez Id: 945
Gene Symbol: CD33
CD33
0.010 Biomarker disease BEFREE SLE CD33(+) myeloid cells exhibited the greatest number of differentially expressed genes at 208 transcripts, SLE B cells expressed 174 transcripts and SLE CD3(+)CD4(+) T cells expressed 92 transcripts. 23826184 2013
Entrez Id: 79589
Gene Symbol: RNF128
RNF128
0.010 AlteredExpression disease BEFREE SLE PBMCs expressed low levels of Cbl-b and GRAIL proteins. 25351606 2016
Entrez Id: 51083
Gene Symbol: GAL
GAL
0.010 AlteredExpression disease BEFREE SLE T-cells expressed lower amounts of Gal-1 than healthy T-cells and were less sensitive to exGal-1. 25468561 2015
Entrez Id: 3956
Gene Symbol: LGALS1
LGALS1
0.010 AlteredExpression disease BEFREE SLE T-cells expressed lower amounts of Gal-1 than healthy T-cells and were less sensitive to exGal-1. 25468561 2015
Entrez Id: 1820
Gene Symbol: ARID3A
ARID3A
0.020 Biomarker disease BEFREE SLE HSPCs with high numbers of ARID3a(+) cells also more readily generated autoantibody-producing cells than HSPCs with lower levels of ARID3a in a humanized mouse model. 25535283 2015
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.050 AlteredExpression disease BEFREE SLE inactive patients showed similar PTPN22 mRNA expression levels to healthy controls, whereas in patients with severe flare, the expression was nearly depleted. 26013387 2016
Entrez Id: 6717
Gene Symbol: SRI
SRI
0.010 GeneticVariation disease BEFREE SLE Responder Index (SRI-4; primary end point) and British Isles Lupus Assessment Group-based Composite Lupus Assessment (BICLA) were assessed at week 24. 27672124 2017
Entrez Id: 3447
Gene Symbol: IFNA13
IFNA13
0.030 AlteredExpression disease BEFREE SLE in patients is characterized by a constitutive increase in serum levels of IFN-α and an increase in the expression IFN-stimulated genes. 28062222 2017
Entrez Id: 3439
Gene Symbol: IFNA1
IFNA1
0.030 AlteredExpression disease BEFREE SLE in patients is characterized by a constitutive increase in serum levels of IFN-α and an increase in the expression IFN-stimulated genes. 28062222 2017
Entrez Id: 9475
Gene Symbol: ROCK2
ROCK2
0.010 Biomarker disease BEFREE SLE T cells or in vitro-differentiated Th17 cells were treated with Y27632 (a pan-ROCK inhibitor), KD025 (a selective ROCK2 inhibitor) or simvastatin (which inhibits RhoA, a major ROCK activator). 28283529 2017
Entrez Id: 1506
Gene Symbol: CTRL
CTRL
0.010 Biomarker disease BEFREE SLE and CTRL groups showed similar fasting glucose, glucose response, and skeletal muscle GLUT-4 translocation after MTT. 28320046 2018
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.050 AlteredExpression disease BEFREE SLE patients presented higher body mass index (p = 0.046) and CRP levels (p = 0.017) than controls. 28567557 2017
Entrez Id: 567
Gene Symbol: B2M
B2M
0.010 AlteredExpression disease BEFREE SLE activity was assessed with Systemic Lupus Erythematosus Disease Activity Index 2000 (SLEDAI-2K), and by measuring the levels of C3 and C4 complement components, anti-double stranded DNA antibodies (anti-dsDNA antibodies) and β2M. 29533541 2018
Entrez Id: 9370
Gene Symbol: ADIPOQ
ADIPOQ
0.010 AlteredExpression disease BEFREE SLE disease activity and complement components may suggest regulatory effect of adipokines (adiponectin and leptin) on disease pathogenesis. 30098476 2018
Entrez Id: 3952
Gene Symbol: LEP
LEP
0.030 AlteredExpression disease BEFREE SLE disease activity and complement components may suggest regulatory effect of adipokines (adiponectin and leptin) on disease pathogenesis. 30098476 2018
Entrez Id: 2152
Gene Symbol: F3
F3
0.010 GeneticVariation disease BEFREE SLE NETs were decorated with tissue factor (TF) and interleukin-17A (IL-17A), which promoted thrombin generation and the fibrotic potential of cultured skin fibroblasts. 30563869 2019
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.090 Biomarker disease BEFREE SLE NETs were decorated with tissue factor (TF) and interleukin-17A (IL-17A), which promoted thrombin generation and the fibrotic potential of cultured skin fibroblasts. 30563869 2019
Entrez Id: 10950
Gene Symbol: BTG3
BTG3
0.020 GeneticVariation disease BEFREE SLE was defined as ≥ 4 ICD codes for SLE and ANA ≥ 1:160. 30875459 2020
Entrez Id: 7503
Gene Symbol: XIST
XIST
0.010 AlteredExpression disease BEFREE SLE T cells also have altered expression of XIST RNA interactome genes, accounting for perturbations of Xi epigenetic features. 30944248 2019
Entrez Id: 3949
Gene Symbol: LDLR
LDLR
0.010 AlteredExpression disease BEFREE SLE LDG exhibited significantly heightened surface expression of various activation markers and also of lectin-like oxidised low-density lipoprotein receptor-1, previously described to be associated with PMN-MDSC. 31040119 2019