Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4811
Gene Symbol: NID1
NID1
0.120 GeneticVariation disease BEFREE Given that the Dandy-Walker malformation itself is not a pre-requisite to this spectrum of phenotypes, we also suggest a novel term for the NID1-associated disorder in order to give emphasis to this phenotypic variability: "Autosomal Dominant Posterior Fossa Anomalies with Occipital Cephaloceles." 30773799 2019
Entrez Id: 4811
Gene Symbol: NID1
NID1
0.120 GeneticVariation disease BEFREE We performed whole-exome sequencing of a family with autosomal dominant Dandy-Walker malformation and occipital cephaloceles and detected a mutation in the extracellular matrix (ECM) protein-encoding gene NID1. 23674478 2013
Entrez Id: 54903
Gene Symbol: MKS1
MKS1
0.110 Biomarker disease BEFREE Comparison of the clinical features of MKS3-linked cases with reports of MKS1- and MKS2-linked kindreds suggests that polydactyly (and possibly encephalocele) appear less common in MKS3-linked families. 12384791 2002
Entrez Id: 2218
Gene Symbol: FKTN
FKTN
0.110 GeneticVariation disease BEFREE In the fetus with ventriculomegaly with encephalocele c.1167dupA mutation in the FKTN gene, in the fetus with severe polyhydramnion c.167ins6[TTTCCC] mutation in the BSND gene, and in the fetus with enlarged echogenic kidneys, c.3761_3762delCCinsG in the PKHD1 gene were identified. 29327352 2018
Entrez Id: 4488
Gene Symbol: MSX2
MSX2
0.110 Biomarker disease BEFREE A single-strand conformation analysis (SSCA) mutation screen of the coding sequences of TFAP2alpha and MSX2 was performed for 204 nonsyndromic NTD patients including cases of anencephaly (n = 10), encephalocele (n = 8), and spina bifida aperta, SBA (n = 183). 11320527 2001
Entrez Id: 91147
Gene Symbol: TMEM67
TMEM67
0.110 Biomarker disease BEFREE Comparison of the clinical features of MKS3-linked cases with reports of MKS1- and MKS2-linked kindreds suggests that polydactyly (and possibly encephalocele) appear less common in MKS3-linked families. 12384791 2002
Entrez Id: 3918
Gene Symbol: LAMC2
LAMC2
0.040 Biomarker disease BEFREE Patient age, sex, ethnicity, body mass index (BMI), location of CSF leak, recurrence of CSF leak, and presence of encephalocele(s) were recorded. 31157725 2019
Entrez Id: 3918
Gene Symbol: LAMC2
LAMC2
0.040 Biomarker disease BEFREE The presence and laterality of middle cranial fossa pits (small bony defects containing CSF) and encephaloceles (brain parenchyma protrusion through osseous defects with or without bony remodeling) were recorded. 31780461 2019
Entrez Id: 1437
Gene Symbol: CSF2
CSF2
0.040 Biomarker disease BEFREE Endoscope-assisted repair of CSF otorrhea and temporal lobe encephaloceles via keyhole craniotomy. 28799867 2018
Entrez Id: 1437
Gene Symbol: CSF2
CSF2
0.040 Biomarker disease BEFREE Patient age, sex, ethnicity, body mass index (BMI), location of CSF leak, recurrence of CSF leak, and presence of encephalocele(s) were recorded. 31157725 2019
Entrez Id: 3918
Gene Symbol: LAMC2
LAMC2
0.040 Biomarker disease BEFREE Endoscope-assisted repair of CSF otorrhea and temporal lobe encephaloceles via keyhole craniotomy. 28799867 2018
Entrez Id: 1437
Gene Symbol: CSF2
CSF2
0.040 Biomarker disease BEFREE The presence and laterality of middle cranial fossa pits (small bony defects containing CSF) and encephaloceles (brain parenchyma protrusion through osseous defects with or without bony remodeling) were recorded. 31780461 2019
Entrez Id: 1437
Gene Symbol: CSF2
CSF2
0.040 GeneticVariation disease BEFREE 78 (72.22%) cases had an associated encephalocele with the CSF leak. 31604132 2020
Entrez Id: 3918
Gene Symbol: LAMC2
LAMC2
0.040 GeneticVariation disease BEFREE 78 (72.22%) cases had an associated encephalocele with the CSF leak. 31604132 2020
Entrez Id: 841
Gene Symbol: CASP8
CASP8
0.010 AlteredExpression disease BEFREE In brain tissue, levels of PAX3 were significantly reduced in both encephalocele and spina bifida subtypes; the expression levels of cleaved caspase 3(17 kD) of encephalocele cases and cleaved caspase 8(47/45 kD) in spina bifida cases were higher than in controls; no difference was found in the expression of p53 or caspase 9 between NTDs and controls. 28786179 2017
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.010 GeneticVariation disease BEFREE A functional indel polymorphism rs34396413 in TFAP2A intron-5 significantly increases female encephalocele risk in Han Chinese population. 31020390 2019
Entrez Id: 51684
Gene Symbol: SUFU
SUFU
0.010 GeneticVariation disease BEFREE A case-control study was designed to compare the frequencies of the polymorphism at four sites in the SUFU gene in control and NTDs group, as well as in subtype groups, including anencephaly, spina bifida and encephalocele. 24070372 2014
Entrez Id: 842
Gene Symbol: CASP9
CASP9
0.010 AlteredExpression disease BEFREE In brain tissue, levels of PAX3 were significantly reduced in both encephalocele and spina bifida subtypes; the expression levels of cleaved caspase 3(17 kD) of encephalocele cases and cleaved caspase 8(47/45 kD) in spina bifida cases were higher than in controls; no difference was found in the expression of p53 or caspase 9 between NTDs and controls. 28786179 2017
Entrez Id: 583
Gene Symbol: BBS2
BBS2
0.010 GeneticVariation disease BEFREE Therefore, we decided to sequence the eight BBS genes in a series of 13 antenatal cases presenting with cystic kidneys and polydactyly and/or hepatic fibrosis but no encephalocele. 15666242 2005
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.010 AlteredExpression disease BEFREE In brain tissue, levels of PAX3 were significantly reduced in both encephalocele and spina bifida subtypes; the expression levels of cleaved caspase 3(17 kD) of encephalocele cases and cleaved caspase 8(47/45 kD) in spina bifida cases were higher than in controls; no difference was found in the expression of p53 or caspase 9 between NTDs and controls. 28786179 2017
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.010 Biomarker disease BEFREE The highest frequency (77%) of overexpression for Nanog3 and Sox2 was observed in encephalocele and anencephalic patients, while in the comparison of regional variation, i.e., cephalic to caudal regions of NTDs, the highest frequency of downregulation (regression) of Nanog3 and Sox2 was found in lumbosacral myelomeningocele patients. 23979878 2013
Entrez Id: 22915
Gene Symbol: MMRN1
MMRN1
0.010 GeneticVariation disease BEFREE We performed whole-exome sequencing of a family with autosomal dominant Dandy-Walker malformation and occipital cephaloceles and detected a mutation in the extracellular matrix (ECM) protein-encoding gene NID1. 23674478 2013
Entrez Id: 126820
Gene Symbol: WDR63
WDR63
0.010 Biomarker disease BEFREE These are the first findings supporting a role for WDR63 in encephalocele formation. 29285825 2018
Entrez Id: 3915
Gene Symbol: LAMC1
LAMC1
0.010 GeneticVariation disease BEFREE Mutations in extracellular matrix genes NID1 and LAMC1 cause autosomal dominant Dandy-Walker malformation and occipital cephaloceles. 23674478 2013
Entrez Id: 257
Gene Symbol: ALX3
ALX3
0.010 GeneticVariation disease BEFREE Craniofacial anomalies in FND include anterior cranium bifidum, ocular hypertelorism, orofacial clefting and notching or clefting of the alae nasi. 17955515 2007