Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6662
Gene Symbol: SOX9
SOX9
0.010 AlteredExpression disease BEFREE SOX9 expression was predictive for favorable outcome in ependymoma. 18577562 2008
Entrez Id: 3417
Gene Symbol: IDH1
IDH1
0.140 GeneticVariation disease BEFREE IDH1 mutations were co-present with TP53 mutations in 63% of low-grade diffuse astrocytomas and with loss of heterozygosity 1p/19q in 64% of oligodendrogliomas; they were rare in pilocytic astrocytomas (10%) and primary glioblastomas (5%) and absent in ependymomas. 19246647 2009
Entrez Id: 5243
Gene Symbol: ABCB1
ABCB1
0.020 Biomarker disease BEFREE P-glycoprotein (ABCB1) and breast cancer resistance protein (ABCG2) localize in the microvessels forming the blood-tumor barrier in ependymomas. 20406235 2010
Entrez Id: 861
Gene Symbol: RUNX1
RUNX1
0.010 AlteredExpression disease BEFREE Evi-1 protein expression could be confirmed in formalin-fixed, paraffin-embedded samples of 26 of 28 infratentorial ependymomas but only in 7 of 47 nonependymal glial tumors (P < 0.001). 21493867 2011
Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
0.010 Biomarker disease BEFREE PI3K pathway status was analyzed in ependymoma using gene expression data and immunohistochemical analysis of phosphorylated AKT (P-AKT). 24077346 2013
Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
0.010 Biomarker disease BEFREE PI3K pathway status was analyzed in ependymoma using gene expression data and immunohistochemical analysis of phosphorylated AKT (P-AKT). 24077346 2013
Entrez Id: 5291
Gene Symbol: PIK3CB
PIK3CB
0.010 Biomarker disease BEFREE PI3K pathway status was analyzed in ependymoma using gene expression data and immunohistochemical analysis of phosphorylated AKT (P-AKT). 24077346 2013
Entrez Id: 5294
Gene Symbol: PIK3CG
PIK3CG
0.010 Biomarker disease BEFREE PI3K pathway status was analyzed in ependymoma using gene expression data and immunohistochemical analysis of phosphorylated AKT (P-AKT). 24077346 2013
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.020 Biomarker disease BEFREE C-Kit and VEGFR2 labeled blood vessels were more abundant in ependymoma than in the other two types of tumors. 24190638 2014
Entrez Id: 65998
Gene Symbol: C11orf95
C11orf95
0.500 Biomarker disease BEFREE C11orf95-RELA fusion proteins translocated spontaneously to the nucleus to activate NF-κB target genes, and rapidly transformed neural stem cells--the cell of origin of ependymoma--to form these tumours in mice. 24553141 2014
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.030 GeneticVariation disease BEFREE NOTCH1 mutations in the TAD domain were observed in 20% (2/10) of ependymoma primary cultures. 25486598 2015
Entrez Id: 9368
Gene Symbol: SLC9A3R1
SLC9A3R1
0.020 Biomarker disease BEFREE NHERF1 staining was present in 35% of ependymoma cases that lacked reactivity for EMA, the routine immunohistochemical marker used for ependymoma diagnosis. 25775275 2015
Entrez Id: 4582
Gene Symbol: MUC1
MUC1
0.020 AlteredExpression disease BEFREE EMA and CD99 expression was found in 33/44 (75%) and 11/44 (25%) of ependymomas, respectively. 26287936 2016
Entrez Id: 2108
Gene Symbol: ETFA
ETFA
0.020 AlteredExpression disease BEFREE EMA and CD99 expression was found in 33/44 (75%) and 11/44 (25%) of ependymomas, respectively. 26287936 2016
Entrez Id: 6663
Gene Symbol: SOX10
SOX10
0.020 Biomarker disease BEFREE SOX10-positivity rules out the diagnosis of ependymoma among other glial tumors with high confidence. 26287936 2016
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 AlteredExpression disease BEFREE EGFR is frequently overexpressed in ependymomas. 26686534 2016
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.500 Biomarker disease BEFREE RELA fusion proteins activate signaling for tumor proliferation and malignant progression, resulting in poorer prognoses in these patients compared to those in patients with other ST ependymomas. 28831588 2017
Entrez Id: 6833
Gene Symbol: ABCC8
ABCC8
0.010 Biomarker disease BEFREE SUR1 colocalized most reliably with the neuronal marker, NeuN, in glioblastoma, metastases, and posterior fossa ependymoma samples (p < 0.05). 30079884 2019
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.030 AlteredExpression disease BEFREE NOTCH1 expression in ST-EPN was correlated with the CSCs markers VEGFA and L1CAM overexpression and JAG1 expression was correlated with the CCND1 and CDK6 overexpression. 31308481 2019
Entrez Id: 5243
Gene Symbol: ABCB1
ABCB1
0.020 Biomarker disease BEFREE ABCB1 is a predictive marker of chemotherapy response in ependymoma patients and vardenafil, currently used to treat paediatric pulmonary hypertension in children, could be repurposed to reduce chemoresistance, migration and invasion in paediatric ependymoma patients at non-toxic concentrations. 31311995 2019
Entrez Id: 7015
Gene Symbol: TERT
TERT
0.010 GeneticVariation disease BEFREE Telomerase-reverse transcriptase gene promoter (TERTp) mutation has been identified in a subset of ependymomas with aggressive behavior. 31330336 2019
Entrez Id: 100271722
Gene Symbol: LINC00899
LINC00899
0.010 AlteredExpression disease BEFREE LINC00899 expression increased in spinal ependymoma tissues whereas RBL2 expression decreased. 31432742 2019
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.030 GeneticVariation disease BEFREE FGFR1 was mutated in 3/75 grade II versus 2/7 grade III GG (p = 0.05), 1/7 DNET, 1/100 EP grade II. 31673897 2019
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.010 PosttranslationalModification disease BEFREE TET2 promotor methylation and TET2 protein expression in pediatric posterior fossa ependymoma. 31777116 2019
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.500 GeneticVariation disease BEFREE A De Novo Mouse Model of C11orf95-RELA Fusion-Driven Ependymoma Identifies Driver Functions in Addition to NF-κB. 29949764 2018