Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.140 GeneticVariation disease BEFREE Clinical evaluation revealed that, in addition to bilateral eye defects, SOX2 mutations were associated with anterior pituitary hypoplasia and hypogonadotropic hypogonadism, variable defects affecting the corpus callosum and mesial temporal structures, hypothalamic hamartoma, sensorineural hearing loss, and esophageal atresia. 16932809 2006
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.140 Biomarker disease BEFREE We report a heterozygous SOX2 gene mutation underlying the syndrome of anophthalmia/microphthalmia-esophageal atresia and demonstrate that this entity can be associated to considerable clinical variability as shown by the discordant ocular phenotype observed in monozygotic twin brothers carrying an SOX2 deletion. 16892407 2006
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.140 GeneticVariation disease BEFREE A previously unreported case with severe bilateral microphthalmia and oesophageal atresia has a de novo missense mutation, R74P, that alters a highly evolutionarily conserved residue within the high mobility group domain, which is critical for DNA-binding of SOX2. 16543359 2006
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.140 GeneticVariation disease BEFREE Duplications and polyalanine expansions within the transcription factor SOX3 have recently been described in association with infundibular hypoplasia, hypopituitarism and variable mental retardation, whilst mutations in SOX2 are associated with variable hypopituitarism in association with learning difficulties, oesophageal atresia and anophthalmia. 18174732 2007
Entrez Id: 4613
Gene Symbol: MYCN
MYCN
0.110 GeneticVariation disease BEFREE Dissection of the MYCN locus in Feingold syndrome and isolated oesophageal atresia. 21224895 2011
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.110 Biomarker disease BEFREE However, several genes involved in SOA have been recently identified, namely N-MYC, SOX2, and CHD7 involved in Feingold (MIM 164280), anophthalmia-oesophageal-genital (MIM 600992) and CHARGE syndromes respectively (MIM 214800), suggesting that OA/TOF, at least in their syndromic forms, may be a highly genetically heterogeneous group. 17489843 2007
Entrez Id: 7008
Gene Symbol: TEF
TEF
0.070 Biomarker disease BEFREE A male infant with oesophageal atresia and distal tracheo-oesophageal fistula (TEF type C) underwent right thoracotomy and transpleural repair of TEF on day 4 of life. 30413439 2018
Entrez Id: 7008
Gene Symbol: TEF
TEF
0.070 Biomarker disease BEFREE Esophageal atresia (EA) is a congenital defect of the esophagus involving the interruption of the esophagus with or without connection to the trachea (tracheoesophageal fistula [TEF]). 24460849 2015
Entrez Id: 7008
Gene Symbol: TEF
TEF
0.070 Biomarker disease BEFREE This retrospective review of 66 patients with postoperative recurrent and acquired TEF following esophageal atresia repair is the largest such series to date and provides a new categorization for postoperative TEF that helps clarify the diagnostic and therapeutic challenges for management. 27616617 2017
Entrez Id: 7008
Gene Symbol: TEF
TEF
0.070 Biomarker disease BEFREE Esophageal atresia and tracheoesophageal fistula (EA/TEF) are relatively common malformations in newborns, but the etiology of EA/TEF remains unknown. 29621589 2018
Entrez Id: 7008
Gene Symbol: TEF
TEF
0.070 GeneticVariation disease BEFREE In a cohort of 396 infants with esophageal atresia, 20 (5%) had RAA, with 18 having EA with a distal TEF and 2 with pure EA. 30224238 2019
Entrez Id: 7008
Gene Symbol: TEF
TEF
0.070 GeneticVariation disease BEFREE Second study on the recurrence risk of isolated esophageal atresia with or without trachea-esophageal fistula among first-degree relatives: no evidence for increased risk of recurrence of EA/TEF or for malformations of the VATER/VACTERL association spectrum. 24307608 2013
Entrez Id: 7008
Gene Symbol: TEF
TEF
0.070 GeneticVariation disease BEFREE Shared clinical features in this group of patients include microcephaly, prenatal onset growth restriction, heart defects, tracheoesophageal fistula, and esophageal atresia (TEF/EA), skeletal anomalies, and moderate to severe global developmental delay. 21271665 2011
Entrez Id: 9343
Gene Symbol: EFTUD2
EFTUD2
0.040 GeneticVariation disease BEFREE Recently, the EFTUD2 gene was identified in patients with mandibulofacial dysostosis associated with microcephaly, intellectual disability and esophageal atresia. 23695276 2014
Entrez Id: 9343
Gene Symbol: EFTUD2
EFTUD2
0.040 GeneticVariation disease BEFREE Recently, gross deletions and mutations in EFTUD2 were determined to cause syndromic esophageal atresia (EA), as well. 23879989 2013
Entrez Id: 9343
Gene Symbol: EFTUD2
EFTUD2
0.040 GeneticVariation disease BEFREE No EFTUD2 deletions or mutations were found in a series of patients with isolated OA or isolated oculoauriculovertebral spectrum (OAVS). 23188108 2012
Entrez Id: 9343
Gene Symbol: EFTUD2
EFTUD2
0.040 GeneticVariation disease BEFREE Phenotype analysis of Polish patients with mandibulofacial dysostosis type Guion-Almeida associated with esophageal atresia and choanal atresia caused by EFTUD2 gene mutations. 25387991 2015
Entrez Id: 2737
Gene Symbol: GLI3
GLI3
0.030 GeneticVariation disease BEFREE Whole exome sequencing identifies a mutation in EYA1 and GLI3 in a patient with branchio‑otic syndrome and esophageal atresia: Coincidence or a digenic mode of inheritance? 29257230 2018
Entrez Id: 2737
Gene Symbol: GLI3
GLI3
0.030 GeneticVariation disease BEFREE Our finding is the first to link this GLI3 gene mutation with esophageal atresia in humans, which was previously suggested in an animal model. 24819706 2014
Entrez Id: 2737
Gene Symbol: GLI3
GLI3
0.030 Biomarker disease BEFREE To our best knowledge this is the first study assessing copy number of GLI2 and GLI3 genes in patients with EA. 23442119 2014
Entrez Id: 2950
Gene Symbol: GSTP1
GSTP1
0.020 GeneticVariation disease BEFREE No association was found between GSTT1 and GSTP1 polymorphisms and EA children or their mothers. 20740495 2010
Entrez Id: 9241
Gene Symbol: NOG
NOG
0.020 Biomarker disease BEFREE Mutational analysis of NOG in esophageal atresia and tracheoesophageal fistula patients. 22083168 2012
Entrez Id: 9241
Gene Symbol: NOG
NOG
0.020 GeneticVariation disease BEFREE Haploinsufficiency of NOG gene has been implicated in the development of conductive hearing loss, skeletal anomalies including symphalangism, contractures of joints, and hyperopia in our patient and may also contribute to the development of tracheo-esophageal fistula and/or esophageal atresia. 18983945 2009
Entrez Id: 2944
Gene Symbol: GSTM1
GSTM1
0.020 GeneticVariation disease BEFREE Results suggest that the GSTM1(-/-) null genotype may play an important role in the development of EA during early embryogenesis as a consequence of altered detoxification processes both in children and in the mothers. 20740495 2010
Entrez Id: 2950
Gene Symbol: GSTP1
GSTP1
0.020 GeneticVariation disease BEFREE Recently, the GST family, especially the GSTM1 null genotype (but not the GSTP1 polymorphism I105V), has been associated with esophageal atresia. 23828841 2013