Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.300 GeneticVariation disease BEFREE The TNF-α(-238) (G/A) genotype was significantly associated with a high risk of gastritis and gastric cancer (GC) (P = 0.001 and P = 0.002, resp.). 26504356 2015
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.300 GeneticVariation disease BEFREE In conclusion, COX-2 variant allele/genotype/haplotype carriers may be at high risk for gastritis. 18825488 2009
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.300 GeneticVariation disease BEFREE The TNFA -857 T/T genotype and H. pylori infection were strongly associated with rugal hyperplastic gastritis. 15201584 2004
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.300 GeneticVariation disease BEFREE The IL-1beta-511/-31 and TNF-alpha-308/-857/-863/-1031 genotypes were determined in Helicobacter pylori-positive patients with gastritis only (n = 164), gastric ulcers (n = 110), duodenal ulcers (n = 94), or gastric cancers (n = 105), and in H. pylori-negative controls (n = 172). 17201881 2007
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.300 GeneticVariation disease BEFREE IL-10 -819 T and TNF-alpha -308 A alleles may increase risk of gastritis and lymphoid follicle formation. 17717744 2008
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.300 GeneticVariation disease BEFREE To investigate this inconsistency, we performed a meta-analysis of 36 studies for TNFA -308G>A polymorphism to evaluate the effect of TNFA on genetic susceptibility for gastritis and GC. 24072494 2014
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.300 GeneticVariation disease LHGDN IL-10 -819 T and TNF-alpha -308 A alleles may increase risk of gastritis and lymphoid follicle formation. 17717744 2008
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.300 GeneticVariation disease BEFREE A total of 31% of children with duodenal disease were infected with iceA1 positive strains and had the -238 G to A polymorphism in the TNF-alpha gene vs only 1.6% of children with gastritis alone (P < 0.0005). 17667716 2007
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE Since allelic variation in cagA exists and distinct H. pylori subgenotypes may circulate in different regions, PCR using primers for a variable 3' region of the cagA gene according to a Japanese methodology and for a consensus cagA 3' region used in Western methods was used for cagA detection. cagA was present in 53 (71%) of 75 H. pylori-positive cases when analyzed by the consensus region method and was associated with duodenal ulcer disease (P = 0.02), but not with gastric ulcer (P = 0.26), when compared to patients with duodenitis or gastritis. 11158115 2001
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.100 GeneticVariation disease BEFREE Summarized odds ratios and corresponding 95% confidence intervals (CIs) for IL-1β-511 and IL-1β-31 polymorphisms and gastritis risk were estimated using fixed- or random-effects models when appropriate. 28151895 2017
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE Functional oipA genes were correlated with cagA gene; both genes were significantly associated with gastritis activity, peptic ulcer and gastric adenocarcinoma. 12161099 2002
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.100 GeneticVariation disease BEFREE The IL-8 -251 A/T polymorphism and the polymorphisms in H pylori vacA gene are involved in limiting the infection outcome to gastritis and peptic ulcer or in favoring cancer onset in Iranian patients. 16937534 2006
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE Studies from the West have indicated that the cagA gene and the associated EPIYA genotype of H. pylori is closely linked to the development of severe gastritis and gastric carcinoma; however, as yet no consistent correlation has been found among the bacteria from East Asia. 26934189 2016
Entrez Id: 100151683
Gene Symbol: RNU4ATAC
RNU4ATAC
0.100 GeneticVariation disease CLINVAR
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.100 GeneticVariation disease BEFREE In the case of T-251A of IL-8, the frequency of the A/A genotype was significantly increased in gastritis (P=0.049) and IM (P=0.038) groups as compared with the histologically negative ones. 18301299 2008
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.100 GeneticVariation disease BEFREE We investigated the effects of an interleukin 8 (IL-8) gene polymorphism on the risk of gastroduodenal diseases, the degree of H pylori induced gastritis, and IL-8 gene transcription. 15710978 2005
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE We evaluated the presence of the homA, homB, and cagA genes in 286 strains isolated from patients in the U.S. and Colombian populations (126 with gastritis, 96 with duodenal ulcer, and 64 with gastric cancer) by PCR. 19710266 2009
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE The p53 mutational rate was significantly lower in gastric carcinoma patients with rugal hyperplastic gastritis. 17556902 2007
Entrez Id: 23332
Gene Symbol: CLASP1
CLASP1
0.100 GeneticVariation disease CLINVAR
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE Also, the CG → TA transition was not detected in the CpG codons of the p53 gene in gastritis lesions in Iranian patients. 23452320 2013
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE Although the cagA gene sequence was completely identical between the gastric corpus and the antrum in all patients, the corpus gastritis was more prominent in patients with gastric cancer than those with duodenal ulcer. 16543737 2006
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.100 GeneticVariation disease LHGDN The IL-8 -251 A/T polymorphism and the polymorphisms in H pylori vacA gene are involved in limiting the infection outcome to gastritis and peptic ulcer or in favoring cancer onset in Iranian patients. 16937534 2006
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE Electron spin resonance spectroscopy analysis showed a significant increase in free radical levels in gastritis samples compared with normal, intestinal metaplasia and cancer samples, suggesting that free radicals present in gastritis may contribute to p53 mutations. 14520466 2003
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.100 GeneticVariation disease LHGDN The IL-8 heterozygote mutant variant was detected with a significantly higher frequency among the DU patients and those with gastritis than among the H. pylori-positive controls. 17309748 2007
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE When the patients with different clinical manifestations were compared according to the presence of cagA gene or various vacA genotypes, only the vacA genotypes were significantly different among gastritis, peptic ulcer and gastric cancer patients (chi 2 = 17.8; P = 0.001). 16937534 2006