Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 Biomarker disease HPO
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 Biomarker disease HPO
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.110 Biomarker disease HPO
Entrez Id: 999
Gene Symbol: CDH1
CDH1
0.110 Biomarker disease HPO
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.030 AlteredExpression disease BEFREE Chronic atrophic gastritis with complete intestinal metaplasia (IM) was seen in three patients. p53 protein was not expressed in any of the cases. 8319165 1993
Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
0.010 GeneticVariation disease BEFREE HLA-DQB1 genotyping was performed by the polymerase chain reaction-restriction fragment length polymorphism method on 122 H. pylori-infected patients with atrophic gastritis and 28 uninfected Japanese controls. 10616761 1999
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.050 AlteredExpression disease BEFREE IL-8 levels were higher in patients with atrophic gastritis than in patients with nonatrophic gastritis (p < 0.05). 10927930 2000
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease LHGDN Interleukin 1beta polymorphisms increase risk of hypochlorhydria and atrophic gastritis and reduce risk of duodenal ulcer recurrence in Japan. 12105837 2002
Entrez Id: 355
Gene Symbol: FAS
FAS
0.010 GeneticVariation disease BEFREE FAS and FASL genotypes of the hosts are important determinants in the pathogenesis of gastric atrophy and intestinal metaplasia in H. pylori-infected individuals. 18383830 2008
Entrez Id: 7099
Gene Symbol: TLR4
TLR4
0.040 GeneticVariation disease BEFREE TLR4/D299G/T399I polymorphisms were more frequent in duodenal ulcer and showed a trend in gastric cancer, when compared with non-atrophic gastritis. 18755634 2008
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE PGC polymorphism with H. pylori infection increased risk of GU (OR 8.69; 95% CI 1.01-74.69), and AG (OR 11.12; 95% CI 1.37-90.84) or GC (OR 10.61; 95% CI 1.28-87.79) in a super-multiplicative manner. 19132389 2009
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 Biomarker disease CTD_human Interleukin-1beta (IL-1beta) polymorphisms are associated with peptic ulcer and atrophic gastritis. 19448967 2009
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE Interleukin-1beta (IL-1beta) polymorphisms are associated with peptic ulcer and atrophic gastritis. 19448967 2009
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.020 Biomarker disease BEFREE HLA-DRB1*01 occurred more frequently in controls than in AG patients (11.5% vs. 3.4%, p=0.01) conferring an OR of 0.27. 20627832 2010
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE IL1B-1464-G/C genotype was associated with lower incidence of AG in corpus of the stomach in Asians [odds ratio: 0.7 (95% confidence interval=0.5-0.8); P=0.02]. 20631624 2010
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE IL1RN*2 allele was not linked with AG or intestinal metaplasia in all parts of the stomach both among Asians and Caucasians. 20631624 2010
Entrez Id: 4968
Gene Symbol: OGG1
OGG1
0.020 GeneticVariation disease BEFREE HOGG1 polymorphism in atrophic gastritis and gastric cancer after Helicobacter pylori eradication. 20845517 2010
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.040 AlteredExpression disease BEFREE CDX2 mRNA and protein expression in the CAG group were higher than in the other groups (all P<0.01). 24175801 2013
Entrez Id: 54498
Gene Symbol: SMOX
SMOX
0.010 Biomarker disease BEFREE SMOX was increased in all stages of gastric disease, peaking in tissues with intestinal metaplasia, whereas pEGFR, pEGFR-ERBB2, and pERBB2 were increased predominantly in tissues showing gastritis or atrophic gastritis. 24530706 2014
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.120 GeneticVariation disease BEFREE PSCA rs2294008 C>T polymorphism was assessed in H. pylori-positive Japanese patients (n = 488) with noncardia gastric cancer (n = 193), gastric ulcer (n = 84), duodenal ulcer (n = 61), and atrophic gastritis (n = 150), as well as in H. pylori-negatives (n = 266). 25582162 2015
Entrez Id: 1048
Gene Symbol: CEACAM5
CEACAM5
0.010 AlteredExpression disease BEFREE CEACAM5 expression was increased progressively from normal gastric mucosa to chronic atrophic gastritis, intestinal metaplasia, dysplasia and finally to GC (p<0.05). 26374829 2015
Entrez Id: 7508
Gene Symbol: XPC
XPC
0.010 GeneticVariation disease BEFREE XPC rs1870134-rs2228000-rs2228001-rs2470352-rs2607775 GCAAG haplotype conferred increased risk of GC compared with AG (OR=1.88, P= 6.98 × 10-4). 26760766 2016
Entrez Id: 162394
Gene Symbol: SLFN5
SLFN5
0.010 AlteredExpression disease BEFREE SLFN5 expression was also determined by immunohistochemistry in formalin-fixed paraffin-embedded samples from individuals with non-atrophic gastritis, atrophic gastritis, complete IM, incomplete IM, and GC, respectively. 27032393 2017
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.020 AlteredExpression disease BEFREE STAT3 expression was similar in GC and CAG, which was significantly higher than that in CSG. 27173233 2016
Entrez Id: 1113
Gene Symbol: CHGA
CHGA
0.020 Biomarker disease BEFREE Chromogranin A greater than 61 U/L, the presence of intestinal metaplasia and male gender were independent risk factors for a type 1 gastric neuroendocrine neoplasia in patients with chronic atrophic gastritis. 27592118 2017