Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 55764
Gene Symbol: IFT122
IFT122
0.010 AlteredExpression group BEFREE All patients with both CeD and IBD had normal IgA levels, positive anti-tTG and CeD genetic markers. 31718200 2020
Entrez Id: 100529151
Gene Symbol: IBD11
IBD11
0.010 Biomarker group BEFREE This population-based study identified 34,167 patients with IBD (11,014 patients with Crohn's disease and 23,153 patients with ulcerative colitis) and 102,501 age-and sex-matched subjects without IBD (the control group) from the National Health Insurance database using the International Classification of Disease, 10th revision codes and the rare intractable disease registration program codes. 31158951 2020
Entrez Id: 134864
Gene Symbol: TAAR1
TAAR1
0.010 Biomarker group BEFREE Similarly, we discuss localization of TAAR1 expression in the gut, novel findings that TAAR1 may be implicated in inflammatory bowel diseases, and the reported comorbidities of neuropsychiatric disorders and gastrointestinal disorders. 31836967 2020
Entrez Id: 7048
Gene Symbol: TGFBR2
TGFBR2
0.010 GeneticVariation group BEFREE Total CD3 T Cells Are Necessary and Sufficient to Induce Colitis in Immunodeficient Mice With Dendritic Cell-Specific Deletion of TGFbR2: A Novel IBD Model to Study CD4 and CD8 T-Cell Interaction. 31559420 2020
Entrez Id: 22943
Gene Symbol: DKK1
DKK1
0.010 AlteredExpression group BEFREE IBD was associated (multivariable) with history of uveitis, levels of Dickkopf-1, and tumor necrosis factor, but not with phenotypic presentation (peripheral arthritis, enthesitis, dactylitis, uveitis) or baseline serum levels of other cytokines. 31154418 2020
Entrez Id: 4068
Gene Symbol: SH2D1A
SH2D1A
0.010 GeneticVariation group BEFREE HSCT is the only curative therapy for XLP and this therapy should be urgently considered.What is Known:• SAP and XIAP deficiencies share common clinical feature, HLH, whereas they also have their own specific manifestations.• IBD affects 25-30% of XIAP-deficient patients, which has been reported in other countries especially in European country and Japan.What is New:• This is the largest patient cohort study of XLP in China.• We firstly summarized the clinical features and outcomes of Chinese XIAP-deficient patients and found only 1 in 22 patients developed IBD and diet background may contribute to it; Asian SAP-deficient patients carrying SH2D1A R55X mutation were more prone to HLH. 31754776 2020
Entrez Id: 2119
Gene Symbol: ETV5
ETV5
0.010 AlteredExpression group BEFREE Luciferase assays confirmed that ETS variant 5 (ETV5) was a functional target of miR-219a-5p and ETV5 expression was significantly increased in the inflamed intestinal mucosa and PB-CD4<sup>+</sup> T cells from IBD patients. 31628427 2020
Entrez Id: 10993
Gene Symbol: SDS
SDS
0.010 GeneticVariation group BEFREE Our report may encourage further studies elucidating the possible association between the SDS genetic defect and inflammatory bowel disease. 31196706 2020
Entrez Id: 4350
Gene Symbol: MPG
MPG
0.010 Biomarker group BEFREE The systemic administration of the Hsp90 inhibitor, 17-AAG, was found to be profoundly protective in preclinical mouse models of inflammatory bowel disease (IBD). 31168612 2020
Entrez Id: 261
Gene Symbol: AMCN
AMCN
0.010 Biomarker group BEFREE The mean waiting time to elective surgery for IBD patients with active- and inactive disease (e.g. pouch surgery after subtotal colectomy) at the Amsterdam UMC, location AMC, between 2013-2015 were compared to colorectal cancer surgery. 31402385 2020
Entrez Id: 3658
Gene Symbol: IREB2
IREB2
0.010 Biomarker group BEFREE Several groups of genes reported in AIEC strains were searched in the five non-IBD-AIEC strains, and the presence of fimA, fliC, fuhD, chuA, irp2 and cvaC were confirmed. 31689478 2020
Entrez Id: 199953
Gene Symbol: TMEM201
TMEM201
0.010 Biomarker group BEFREE We conducted a series of single-donor intensive and nonintensive fecal microbiota transplantation (FMT) experiments using feces from IBD patients in remission and healthy non-IBD controls (N = 9 donors) in a mouse model of Crohn's disease (CD)-like ileitis that develops ileitis in germ-free (GF) conditions (SAMP1/YitFC; N = 96 mice). 31750921 2020
Entrez Id: 24146
Gene Symbol: CLDN15
CLDN15
0.010 AlteredExpression group BEFREE While expression of claudin-2 and claudin-15 has been studied in inflammatory bowel disease (IBD) and celiac disease (CD), it has not been assessed in other malabsorptive diseases, and no reports have compared expression in children and adults. 31605016 2020
Entrez Id: 6578
Gene Symbol: SLCO2A1
SLCO2A1
0.010 GeneticVariation group BEFREE To assess clinical outcomes of females diagnosed with Inflammatory Bowel Disease (IBD) and infertility, which underwent in vitro fertilization (IVF) with preimplantation genetic testing for aneuploidy.(PGT-A). 31691606 2019
Entrez Id: 6542
Gene Symbol: SLC7A2
SLC7A2
0.010 AlteredExpression group BEFREE We have reported that both SLC7A2 expression and L-Arg availability are decreased in colonic tissues from inflammatory bowel disease patients and that mice lacking Slc7a2 exhibit a more severe disease course when exposed to dextran sulfate sodium (DSS) compared to wild-type (WT) mice. 30202097 2019
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.010 Biomarker group BEFREE Abbreviations: ADA: Adalimumab; CD: Crohn disease; ECCO: European Crohn's and Colitis Organisation; EEN: exclusive enteral nutrition; ESPGHAN: European Society for Paediatric Gastroenterology Hepatology and Nutrition; FMT: faecal microbiota transplantation; GDP: gross domestic product; HIC: high-income countries; IBD: inflammatory bowel disease; IBDU: inflammatory bowel disease unclassified; IC: ileocolonoscopy; IFX: infliximab; IPAA: ileal pouch anal anastomosis; LMIC: low- and middle-income countries; MH: mucosal healing; OGD: oesophago-gastroduodenoscopy; PCDAI: Paediatric Crohn's Disease Activity Index; PIBD: paediatric inflammatory bowel disease; PUCAI: Paediatric Ulcerative Colitis Activity Index; UC: ulcerative colitis; UGIT: upper gastrointestinal tract; VEO-IBD: very early-onset IBD; WLE: white light endoscopy; 5-ASA: 5 aminosalicylic acid; 6-MP: 6-mercaptopurine. 30900526 2019
Entrez Id: 285
Gene Symbol: ANGPT2
ANGPT2
0.010 Biomarker group BEFREE Angiopoietin-2 wild-type, heterozygote, and knockout mice received a single injection of the procarcinogen azoxymethane and had an IBD-promoting chemical irritant (dextran sodium sulfate) added to their drinking water over a 7-week period. 31173626 2019
Entrez Id: 416
Gene Symbol: ARSF
ARSF
0.010 Biomarker group BEFREE We observed that C3H ASF and 129 ASF IL-10 are more sensitive towardB7 600 μg/mL vitamin B<sub>3</sub> and 1,200 μg/mL vitamin C. The lowest growth rate and viability for all types of organoids was with 1,200 μg/mL vitamin C. From quantitative polymerase chain reaction analysis (qPCR analysis), MUC2 was upregulated for 129 ASF and C3H Conv when exposed to 600 μg/mL and 1,200 μg/mL vitamin C. It suggests that large amounts of glycoprotein may be produced after adding high concentrations of vitamin C. Since inflammatory bowel disease has low level of MUC2, this finding may be helpful in restoring mucosal health by upregulating the MUC2 gene while altering patient's microbiota (Sibila et al., Annals of the American Thoracic Society, 2016). 31071241 2019
Entrez Id: 430
Gene Symbol: ASCL2
ASCL2
0.010 AlteredExpression group BEFREE Here, we demonstrated that Ascl2 was greatly down-regulated in human IBD and experimental colitis. 30722992 2019
Entrez Id: 64116
Gene Symbol: SLC39A8
SLC39A8
0.010 GeneticVariation group BEFREE We aimed to replicate the association between the SLC39A8 [Thr]391 risk allele and gut microbiome composition in patients with inflammatory bowel disease and healthy controls. 30703110 2019
Entrez Id: 10600
Gene Symbol: USP16
USP16
0.010 Biomarker group BEFREE T cell-specific USP16 knockout mice exhibit reduced severity of experimental autoimmune encephalitis and inflammatory bowel disease. 31135381 2019
Entrez Id: 6612
Gene Symbol: SUMO3
SUMO3
0.010 Biomarker group BEFREE We then utilized these nanogels for oral delivery of PIAS1 (protein inhibitor of activated STAT1), a SUMO 3 ligase, encoding plasmid DNA since PIAS1 is a key nodal therapeutic target for IBD due to its ability to control NF-κB-mediated inflammatory signaling. 30839018 2019
Entrez Id: 2201
Gene Symbol: FBN2
FBN2
0.010 Biomarker group BEFREE <b>Abbreviations</b> PSC: Primary sclerosing cholangitis; IBD: inflammatory bowel disease; CCA: cholangiocarcinoma; SAP: serum alkaline phosphatase; ULN: upper limit of normal; UDCA: ursodeoxycholic acid; CRP: c-reactive protein; AST: aspartate aminotransferase; ALT: alanine aminotransferase; INR: international normalized ratio; FIS: fatigue impact scale; AE: adverse events; PREsTo: PSC risk estimate tool; IQR: interquartile range; ELF: enhanced liver fibrosis. 31131678 2019
Entrez Id: 468
Gene Symbol: ATF4
ATF4
0.010 Biomarker group BEFREE ATF4 might therefore be a target for the treatment of IBD. 30452920 2019
Entrez Id: 1621
Gene Symbol: DBH
DBH
0.010 Biomarker group BEFREE Seven SNPs were observed from DβH targeted exome sequencing in the 45 IBD patients. 30817802 2019