Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 GeneticVariation disease BEFREE Osteogenesis imperfecta type I: second-trimester diagnosis and incidental identification of a dominant COL1A1 deletion mutation in the paucisymptomatic father. 22795108 2012
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 GeneticVariation disease BEFREE We describe a three generation family with OI type I in which all affected members have one normal COL1A1 allele and another from which the intragenic Eco RI restriction site near the 3' end of the gene is missing. 2295701 1990
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 GeneticVariation disease BEFREE Using PCR amplification of genomic DNA from affected individuals, followed by denaturing gradient gel electrophoresis (DGGE) and SSCP, we identified seven different COL1A1 gene mutations in eight unrelated families with OI type I. 7942841 1994
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 GeneticVariation disease BEFREE Here we identified a novel splicing mutation c.3207+1G>A (GenBank ID: JQ236861) in the COL1A1 gene that caused type I OI in a Chinese family. 22565191 2012
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 Biomarker disease BEFREE This study illuminates the intra-nuclear fate of COL1A1 RNA in osteogenesis imperfecta (OI) Type I. 10931857 2000
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 GeneticVariation disease BEFREE Osteogenesis imperfecta type I is commonly due to a COL1A1 null allele of type I collagen. 1353940 1992
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 AlteredExpression disease BEFREE COL1A1 and miR-29b showed lower expression values in OI type I and type III samples. 24767406 2014
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 GeneticVariation disease BEFREE Here we report the application of this COL1A1 null-allele detection test for prenatal diagnosis in a patient with OI type I in which it was shown that the fetus had inherited the normal COL1A1 allele from his affected mother and would not be affected with OI. 10521849 1999
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 Biomarker disease BEFREE The disease segregated with COL1A1 in 2 OI type I families, and with COL1A2 in one OI type IV family. 8096115 1993
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
1.000 GeneticVariation disease BEFREE We have identified a 4 bp insertion in the 3' UTR of the COL1A1 gene localized downstream of the MnlI RFLP and used both markers in combination for the analysis of patients with OI type I. 9503369 1998
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 GeneticVariation disease BEFREE Deletion of 19 base pairs in intron 13 of the gene for the pro alpha 2(I) chain of type-I procollagen (COL1A2) causes exon skipping in a proband with type-I osteogenesis imperfecta. 7916744 1993
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 GeneticVariation disease BEFREE On the other hand, Sillence OI type I segregated with both COL1A1 (17 pedigrees) and COL1A2 (7 pedigrees). 1967900 1990
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 Biomarker disease BEFREE Some phenotype correlations, notably between the OI type IV phenotype and linkage to COL1A2 and between presenile hearing loss in OI type I and linkage to COL1A1, can be used to improve risk estimates substantially in families where there are no segregation data to distinguish whether COL1A1 or COL1A2 is the mutant locus. 8456805 1993
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 GeneticVariation disease BEFREE Type I osteogenesis imperfecta: a nonfunctional allele for pro alpha 1 (I) chains of type I procollagen. 6954526 1982
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 Biomarker disease BEFREE COL1A1 and COL1A2 were analyzed in 79 children with OI (type I n=33, type III n=25 and type IV n=21) treated with Pamidronate. 26957348 2016
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 GeneticVariation disease BEFREE COL1A2 p.Gly1066Val variant identified in a Han Chinese family with osteogenesis imperfecta type I. 30829463 2019
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 GeneticVariation disease BEFREE OI type I was linked to the alpha 1(I) gene (COL1A1) in two families, and to the alpha 2(I) gene (COL1A2) in one family. 1972760 1990
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 GeneticVariation disease BEFREE Mutations linked to the pro alpha 2(I) collagen gene are responsible for several cases of osteogenesis imperfecta type I. 3023615 1986
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.890 GeneticVariation disease BEFREE A second family with type I osteogenesis imperfecta carried a heterozygous nonsense mutation c.4060C > T (p.Gln1354X) within the last exon of COL1A2. 24140640 2013
Entrez Id: 51365
Gene Symbol: PLA1A
PLA1A
0.010 GeneticVariation disease BEFREE Mutations identified in patients with OI type I lead to premature termination codons and allele-specific reductions of nuclear mRNA (termed nonsense-mediated mRNA decay or NMD), resulting in a COL1A1 null allele. 10686420 2000
Entrez Id: 80316
Gene Symbol: PPP1R2C
PPP1R2C
0.010 GeneticVariation disease BEFREE One caused a substitution of glycine 200 by valine at the N-terminus of D1 in OI type I/IV, lowering collagen stability by 50% at 34 degrees C. The other one was a substitution of valine 349 by phenylalanine at the C-terminus of D1 in OI type I, lowering collagen stability at 37.5 degrees C. Two other mutations, reported before, changed amino residues in D4. 18670065 2008
Entrez Id: 407024
Gene Symbol: MIR29B1
MIR29B1
0.010 AlteredExpression disease BEFREE COL1A1 and miR-29b showed lower expression values in OI type I and type III samples. 24767406 2014
Entrez Id: 50964
Gene Symbol: SOST
SOST
0.010 AlteredExpression disease BEFREE SOST levels increased in the group of patients with type I OI during therapy with teriparatide (compared with placebo, p = 0.01). 29044725 2018
Entrez Id: 407025
Gene Symbol: MIR29B2
MIR29B2
0.010 AlteredExpression disease BEFREE COL1A1 and miR-29b showed lower expression values in OI type I and type III samples. 24767406 2014
Entrez Id: 5358
Gene Symbol: PLS3
PLS3
0.010 GeneticVariation disease BEFREE Furthermore, in an additional five families (described in less detail) referred for diagnosis or ruling out of osteogenesis imperfecta type I, a rare variant (rs140121121) in PLS3 was found. 24088043 2013