Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3937
Gene Symbol: LCP2
LCP2
0.010 Biomarker disease BEFREE CD8 FL T cells demonstrated highly reduced TCR-induced phosphorylation (p) of ERK and reduced production of IFNγ, while TCR proximal signaling (p-CD3ζ, p-SLP76) was not affected. 29217528 2018
Entrez Id: 5594
Gene Symbol: MAPK1
MAPK1
0.010 Biomarker disease BEFREE CD8 FL T cells demonstrated highly reduced TCR-induced phosphorylation (p) of ERK and reduced production of IFNγ, while TCR proximal signaling (p-CD3ζ, p-SLP76) was not affected. 29217528 2018
Entrez Id: 10666
Gene Symbol: CD226
CD226
0.010 Biomarker disease BEFREE The costimulatory receptor CD226 was downregulated in TIGIT<sup>+</sup> compared with TIGIT<sup>-</sup> CD8 FL T cells, further skewing the balance toward immunosuppression.<b>Conclusions:</b> TIGIT blockade is a relevant strategy for improved immunotherapy in FL. 29217528 2018
Entrez Id: 10672
Gene Symbol: GNA13
GNA13
0.010 AlteredExpression disease BEFREE Thus, GNA13 protein expression was an independent prognostic factor and may affect disease progression in FL. 30307409 2018
Entrez Id: 157848
Gene Symbol: NKX6-3
NKX6-3
0.010 AlteredExpression disease BEFREE Based on these findings we performed detailed studies of the B-cell specific NKL homeobox gene NKX6-3 which showed enhanced activity in patient subsets of follicular lymphoma, mantle cell lymphoma and diffuse large B-cell lymphoma (DLBCL), and in three DLBCL cell lines to serve as in vitro models. 30308041 2018
Entrez Id: 953
Gene Symbol: ENTPD1
ENTPD1
0.010 Biomarker disease BEFREE CD39 seems to be especially relevant to differentiate non-GCB DLBCL from BL and from FL. 28509416 2018
Entrez Id: 220972
Gene Symbol: MARCHF8
MARCHF8
0.010 AlteredExpression disease BEFREE Through gene ontology analysis, we found potential regulatory pathways that are deregulated in DLBCL and FL due to improper expression of miR target genes. 29487703 2018
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.010 GeneticVariation disease BEFREE In a patient who developed chronic myelomonocytic leukemia (CMML) after follicular lymphoma (FL), TET2 mutation was identified in both CMML and FL cells. 29666007 2018
Entrez Id: 10611
Gene Symbol: PDLIM5
PDLIM5
0.010 AlteredExpression disease BEFREE We evaluated MEF2B expression, in comparison with additional GC markers, LIM domain-only transcription factor 2 (LMO2), and human GC-associated lymphoma (HGAL), in a variety of B-cell lymphomas, with particular emphasis on their utility in differentiating FL from MZL. 29309299 2018
Entrez Id: 290
Gene Symbol: ANPEP
ANPEP
0.010 AlteredExpression disease BEFREE CD13 expression is present more often in LPL- and FMC7-positive CLL/SLL than other mature B cell lymphoma subtypes and absent in cases of FL and may be a useful feature for diagnostic subtyping. 30066366 2018
Entrez Id: 6387
Gene Symbol: CXCL12
CXCL12
0.010 Biomarker disease BEFREE These data identified the IL-4/CXCL12 loop as a previously unrecognized pathway involved in lymphoid stroma polarization and as a potential therapeutic target in FL patients. 28202459 2017
Entrez Id: 8797
Gene Symbol: TNFRSF10A
TNFRSF10A
0.010 GeneticVariation disease BEFREE Rituximab response in follicular lymphoma is associated with the rs20575 polymorphism in TRAILR1 extrinsic apoptosis trigger. 27977511 2017
Entrez Id: 9696
Gene Symbol: CROCC
CROCC
0.010 Biomarker disease BEFREE Primary cilia were visualised by dual immunofluorescence for anti-CROCC (ciliary rootlet coiled-coil) and anti-tubulin in a range of human cancers (including carcinomas of stomach, pancreas, prostate, lung and colon, lobular and ductal breast cancers and follicular lymphoma) and in matched normal tissue (stomach, pancreas, lung, large and small intestines, breast and reactive lymph nodes) samples using a tissue microarray; their frequency, association with proliferation, was measured by Ki-67 staining and their structure was analysed. 27872140 2017
Entrez Id: 5689
Gene Symbol: PSMB1
PSMB1
0.010 GeneticVariation disease BEFREE Proteasome subunit beta type 1 (PSMB1) rs12717 polymorphism, a single nucleotide polymorphism with unknown functional effect, was recently reported to influence response to bortezomib-based therapy in follicular lymphoma. 28733196 2017
Entrez Id: 100529063
Gene Symbol: BCL2L2-PABPN1
BCL2L2-PABPN1
0.010 AlteredExpression disease BEFREE Unexpectedly, BCLW was overexpressed as frequently as BCL2 in follicular lymphoma. 28855351 2017
Entrez Id: 2875
Gene Symbol: GPT
GPT
0.010 GeneticVariation disease BEFREE The most common grade 3-4 adverse events were ALT elevation (two [67%] of three) and rash (two [67%] of three) for patients with mantle cell lymphoma and neutropenia (five [63%] of eight) and rash (four [50%] of eight) for patients with follicular lymphoma. 28314699 2017
Entrez Id: 10878
Gene Symbol: CFHR3
CFHR3
0.010 Biomarker disease BEFREE To assess the role of three SNP-associated complement-regulatory proteins (CFH, CFHR1, and CFHR3) in clinical response to anti-CD20 mAb, we studied two cohorts of patients treated with anti-CD20 mAb.<b>Experimental Design:</b> Cohorts included the Iowa/Mayo Lymphoma SPORE observational cohort of subjects with a new diagnosis of follicular lymphoma treated with rituximab and the GAUSS prospective randomized trial cohort of follicular lymphoma subjects randomized to receive single-agent rituximab or obinutuzumab. 27528699 2017
Entrez Id: 23411
Gene Symbol: SIRT1
SIRT1
0.010 PosttranslationalModification disease BEFREE SIRT1 promoter shows a methylation decrease in the order: follicular hyperplasia - FL - DLBCL. 28324774 2017
Entrez Id: 3902
Gene Symbol: LAG3
LAG3
0.010 AlteredExpression disease BEFREE Clinically, LAG-3 expression on intratumoral T cells correlated with a poor outcome in FL patients. 28977875 2017
Entrez Id: 84329
Gene Symbol: HVCN1
HVCN1
0.010 Biomarker disease BEFREE This study expands the number of mutated genes described in several known signaling pathways and complexes involved in lymphoma pathogenesis (BCR, Notch, SWitch/sucrose nonfermentable (SWI/SNF), vacuolar ATPases) and identified novel recurrent mutations (EGR1/2, POU2AF1, BTK, ZNF608, HVCN1) that require further investigation in the context of FL biology, prognosis, and treatment. 28064239 2017
Entrez Id: 89857
Gene Symbol: KLHL6
KLHL6
0.010 Biomarker disease BEFREE Consistent with its discovery as a germinal center marker, KLHL6 was positive mainly in B-cell neoplasms of germinal center derivation, including 95% of follicular lymphomas (106/112). 29140403 2017
Entrez Id: 23111
Gene Symbol: SPART
SPART
0.010 PosttranslationalModification disease BEFREE Kruppel-like factor 4 (KLF4), Death-associated protein kinase 1 (DAPK1) and Spastic Paraplegia 20 (SPG20) methylation increase significantly in FL and DLBCL compared to follicular hyperplasias. 28324774 2017
Entrez Id: 9314
Gene Symbol: KLF4
KLF4
0.010 Biomarker disease BEFREE Kruppel-like factor 4 (KLF4), Death-associated protein kinase 1 (DAPK1) and Spastic Paraplegia 20 (SPG20) methylation increase significantly in FL and DLBCL compared to follicular hyperplasias. 28324774 2017
Entrez Id: 25
Gene Symbol: ABL1
ABL1
0.010 Biomarker disease BEFREE Oligonucleotide sets that probe breakpoints of <i>IGH-BCL2</i> (immunoglobulin heavy-apoptosis regulator) in follicular lymphoma (FL), <i>MYC-IGH</i> (MYC proto-oncogene, bHLH transcription factor-immunoglobulin heavy) in Burkitt lymphoma (BL) and <i>BCR-ABL1</i> (RhoGEF and GTPase activating protein-ABL proto-oncogene 1, non-receptor tyrosine kinase) in chronic myelogenous leukemia (CML) were designed. 28515100 2017
Entrez Id: 4023
Gene Symbol: LPL
LPL
0.010 Biomarker disease BEFREE Histologic subtypes included 8 follicular lymphoma (FL), 7 marginal zone lymphoma (MZL) (1 splenic, 2 extranodal, and 4 nodal), 15 Waldenström's macroglobulinemia (WM), 1 lymphoplasmacytic lymphoma, 1 small lymphocytic lymphoma, and 1 low-grade B-cell lymphoma with plasmacytic differentiation (unable to be classified better as MZL or LPL). 28230270 2017