Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.140 AlteredExpression disease BEFREE GATA-2 transcription factor deficiency has recently been described in patients with a propensity towards myeloid malignancy associated with other highly variable phenotypic features: chronic leukocytopenias (dendritic cell-, monocyto-, granulocyto-, lymphocytopenia), increased susceptibility to infections, lymphatic vasculature abnormalities, and sensorineural deafness. 25879889 2015
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.140 Biomarker disease BEFREE In GATA-2-deficient cases, we found the most profound B-cell lymphopenia, including its progenitors in blood and bone marrow, which correlated with significantly diminished intronRSS-Kde recombination excision circles in comparison to other myelodysplastic syndrome/aplastic anemia cases. 27013649 2016
Entrez Id: 930
Gene Symbol: CD19
CD19
0.140 Biomarker disease BEFREE Ultra-high dose rate was equally potent in depleting CD3, CD4, CD8, and CD19 lymphocyte populations in both cardiac and splenic irradiation models of lymphopenia. 31748640 2019
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.140 AlteredExpression disease BEFREE Mutations in the transcription factor GATA2 underlie the syndrome of monocytopenia and B- and natural killer (NK)-cell lymphopenia associated with opportunistic infections and cancers. 23365458 2013
Entrez Id: 11151
Gene Symbol: CORO1A
CORO1A
0.130 GeneticVariation disease BEFREE Coronin-1A deficiency is a recently recognized autosomal recessive primary immunodeficiency caused by mutations in CORO1A (OMIM 605000) that results in T-cell lymphopenia and is classified as T(-)B(+)NK(+)severe combined immunodeficiency (SCID). 25073507 2014
Entrez Id: 11151
Gene Symbol: CORO1A
CORO1A
0.130 Biomarker disease BEFREE CORO1A deficiency causes T(-)B(+) natural killer-positive severe combined immunodeficiency or T-cell lymphopenia with severe viral infections. 26476480 2016
Entrez Id: 11151
Gene Symbol: CORO1A
CORO1A
0.130 Biomarker disease BEFREE Most strikingly, coronin 1 deficiencies give rise to immune deficiencies in mice and humans that are characterized by severe T lymphocytopenia. 25269405 2014
Entrez Id: 472
Gene Symbol: ATM
ATM
0.120 Biomarker disease BEFREE Sixty-four children were recalled for follow-up due to low TREC and/or KREC levels, and three patients with immunodeficiency (Artemis-SCID, ATM, and an as yet unclassified T cell lymphopenia/hypogammaglobulinemia) were identified. 27873105 2017
Entrez Id: 1493
Gene Symbol: CTLA4
CTLA4
0.120 GeneticVariation disease BEFREE We describe 1 patient with cytotoxic T-lymphocyte-associated protein 4 (CTLA-4) haploinsufficiency who had recurrent enhancing brain lesions, nodular pulmonary infiltrates, hepatosplenomegaly, immune cytopenias, as well as progressive hypogammaglobulinemia and lymphopenia. 29200144 2018
Entrez Id: 6789
Gene Symbol: STK4
STK4
0.120 Biomarker disease BEFREE Our data should raise physicians' awareness of [1] lymphoma proneness of STK4 deficient patients even in the absence of EBV infection and [2] possibly underlying STK4 deficiency in pediatric patients with a history of recurrent infections, CD4 lymphopenia and lymphoma and unknown genetic make-up. 30386345 2018
Entrez Id: 92579
Gene Symbol: G6PC3
G6PC3
0.120 Biomarker disease BEFREE Here we investigate the findings of T cell lymphopenia and inflammatory bowel disease in a child with G6PC3 deficiency due to compound heterozygous mutations in intron 3 (c.IVS3-1 G>A) and exon 6 (c.G778G/C; p.Gly260/Arg). 23180359 2013
Entrez Id: 1493
Gene Symbol: CTLA4
CTLA4
0.120 GeneticVariation disease BEFREE CTLA4 mutations were associated with lymphopenia and decreased T-, B-, and natural killer (NK) cell counts. 29729943 2018
Entrez Id: 92579
Gene Symbol: G6PC3
G6PC3
0.120 Biomarker disease BEFREE Our experience suggests that a diagnosis of congenital neutropenia due to G6PC3 may not be as straightforward in such patients with combined lymphopenia and thrombocytopenia. 26479985 2015
Entrez Id: 472
Gene Symbol: ATM
ATM
0.120 GeneticVariation disease BEFREE These findings identify the genomic instability associated with V(D)J recombination at the TCRδ locus as the molecular origin of both lymphocytopenia and the signature t(12;14) translocations associated with ATM deficiency. 25721125 2015
Entrez Id: 7852
Gene Symbol: CXCR4
CXCR4
0.120 Biomarker disease BEFREE Therefore, efficient Cxcr4 desensitization is critical for lymphoid differentiation of HSPCs, and its impairment is a key mechanism underpinning the lymphopenia observed in mice and likely in WS patients. 28550161 2017
Entrez Id: 6789
Gene Symbol: STK4
STK4
0.120 GeneticVariation disease BEFREE We report the first case of a child with STK4-mutated CD4+ lymphocytopenia who developed Epstein-Barr virus associated MALT lymphoma arising in the salivary gland. 27163767 2016
Entrez Id: 5880
Gene Symbol: RAC2
RAC2
0.120 GeneticVariation disease BEFREE We identified 3 patients with de novo RAC2[E62K] mutations resulting in severe T- and B-cell lymphopenia, myeloid dysfunction, and recurrent respiratory infections. 30723080 2019
Entrez Id: 5880
Gene Symbol: RAC2
RAC2
0.120 GeneticVariation disease BEFREE The causes of the T-cell lymphopenia included DiGeorge syndrome (n = 2), idiopathic T-cell lymphopenia (n = 2), extravascular extravasation of lymphocytes (n = 3), and a Rac2 mutation (n = 1). 19996402 2009
Entrez Id: 7852
Gene Symbol: CXCR4
CXCR4
0.120 Biomarker disease BEFREE In contrast, Cxcr4(+/1013) mice show defective thymopoiesis and B-cell development, accounting for circulating lymphopenia. 22438253 2012
Entrez Id: 931
Gene Symbol: MS4A1
MS4A1
0.110 Biomarker disease BEFREE The purpose of this review was to critically analyse the literature on invasive fungal infections (IFIs) occurring in association with mAbs and fusion proteins other than tumour necrosis alpha (TNF-α) inhibitors, including therapeutics modulating T-cell-mediated pathologies (muromonab, abatacept, belatacept, ipilimumab, basiliximab, daclizumab), inducing lymphopenia (alemtuzumab), depleting CD20+ B cells (rituximab) and interfering with various targets (anakinra, natalizumab, blodalumab, ixekizumab and others) with a focus on children, and to provide a framework of evaluating the risk for IFIs in this population. 28444889 2017
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.110 GeneticVariation disease BEFREE Since CD3(+) CD4(+) CD45RA(+) CD45RO(-) CD31(+) RTE are reported to be TCR diverse and to contain regulatory T cells, we found it important to report that continuously reduced numbers of CD3(+) CD4(+) CD45RA(+) CD45RO(-) CD31(+) RTE, in the context of CHD7 haploinsufficiency and despite severe lymphopenia, is consistent with an uneventful clinical outcome. 23747993 2013
Entrez Id: 1794
Gene Symbol: DOCK2
DOCK2
0.110 Biomarker disease BEFREE Although absence of DOCK2 leads to lymphopenia, little is known about the signaling mechanisms and physiologic functions of DOCK2 in B cells. 31405607 2019
Entrez Id: 915
Gene Symbol: CD3D
CD3D
0.110 Biomarker disease BEFREE The phenotype is usually T-B+NK+ SCID with lymphopenia where the clinical findings may be mild (CD3γ) or severe (CD3δ, ε, ζ) owing to the underlying molecular defect. 23590417 2013
Entrez Id: 6772
Gene Symbol: STAT1
STAT1
0.110 GeneticVariation disease BEFREE Patients with heterozygous STAT1 gain-of-function (GOF) mutations usually present with chronic mucocutaneous candidiasis (CMC) but may also experience bacterial and viral infections, autoimmune manifestations, lymphopenia, cerebral aneurysms, and increased risk to develop tumors. 27803128 2017
Entrez Id: 9094
Gene Symbol: UNC119
UNC119
0.110 Biomarker disease BEFREE A mutation of human UNC119 impairs LCK activation and is associated with inadequate signaling, diminished T cell responses to TCR stimulation, CD4 lymphopenia, and infections of viral, bacterial, and fungal origin. 22729960 2012