Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1859
Gene Symbol: DYRK1A
DYRK1A
0.500 GeneticVariation disease LHGDN Truncation of the Down syndrome candidate gene DYRK1A in two unrelated patients with microcephaly. 18405873 2008
Entrez Id: 8573
Gene Symbol: CASK
CASK
0.500 GeneticVariation disease BEFREE Recently, CASK aberrations caused by both mutations and deletions have been reported to cause severe mental retardation (MR), microcephaly and disproportionate pontine and cerebellar hypoplasia (MICPCH) in females. 21735175 2012
Entrez Id: 8573
Gene Symbol: CASK
CASK
0.500 GeneticVariation disease BEFREE The NDP deletion could account for the exudative retinopathy and the CASK deletion for the microcephaly, while CASK and KDM6A have both been associated with coloboma. 29617172 2018
Entrez Id: 284403
Gene Symbol: WDR62
WDR62
0.500 GeneticVariation disease BEFREE A novel WDR62 missense mutation in microcephaly with abnormal cortical architecture and review of the literature. 30706430 2019
Entrez Id: 8573
Gene Symbol: CASK
CASK
0.500 GeneticVariation disease BEFREE Heterozygous loss of function mutations of CASK at Xp11.4 in females cause severe intellectual disability (ID) and microcephaly with pontine and cerebellar hypoplasia (MICPCH). 23165780 2012
Entrez Id: 8573
Gene Symbol: CASK
CASK
0.500 GeneticVariation disease BEFREE CASK mutations have been reported in patients with intellectual disability with microcephaly and pontocerebellar hypoplasia or congenital nystagmus, and those with FG syndrome. 22709267 2012
Entrez Id: 6513
Gene Symbol: SLC2A1
SLC2A1
0.480 GeneticVariation disease BEFREE The comparison of the clinical features between the 19 SLC2A1 mutated and the 226 non-mutated patients revealed that the onset of epilepsy within the first year of life (when associated with developmental delay or other neurological manifestations), the association of epilepsy with PD and acquired microcephaly are more common in mutated subjects. 30895386 2019
Entrez Id: 6513
Gene Symbol: SLC2A1
SLC2A1
0.480 GeneticVariation disease BEFREE Glucose transporter type 1 deficiency syndrome (Glut-1DS) is caused by autosomal dominant haplodeficiency or autosomal recessive with homozygous mutation of the glucose transporter 1 (SLC2A1) gene and is characterized by severe seizures, developmental delay, ataxia and acquired microcephaly. 22814174 2012
Entrez Id: 6513
Gene Symbol: SLC2A1
SLC2A1
0.480 GeneticVariation disease BEFREE Mutations in SLC2A1, encoding the glucose transporter type 1 (Glut1), cause a wide range of neurological disorders: (1) classical Glut1 deficiency syndrome (Glut1-DS) with an early onset epileptic encephalopathy including a severe epilepsy, psychomotor delay, ataxia and microcephaly, (2) paroxysmal exercise-induced dyskinesia (PED) and (3) various forms of idiopathic/genetic generalized epilepsies such as different forms of absence epilepsies. 25022942 2014
Entrez Id: 3981
Gene Symbol: LIG4
LIG4
0.470 GeneticVariation disease BEFREE Here we present an unusual case of DNA ligase IV deficiency syndrome without dysmorphic facial findings and microcephaly complicated with Epstein-Barr virus-associated large B-cell lymphoma with the right lung involvement and a massive brain tumor lesion in a two-year-old female. 26774591 2016
Entrez Id: 3981
Gene Symbol: LIG4
LIG4
0.470 GeneticVariation disease BEFREE Deficiencies in DNA ligase 4 and the recently described Cernunnos gene result in microcephaly, growth retardation, and typical bird-like facies. 21721379 2011
Entrez Id: 3981
Gene Symbol: LIG4
LIG4
0.470 GeneticVariation disease BEFREE Mutations of Lig4 are exclusively hypomorphic and have only been described in six patients, four exhibiting mild immunodeficiency associated with microcephaly and developmental delay, while two patient had leukemia. 16358361 2006
Entrez Id: 3981
Gene Symbol: LIG4
LIG4
0.470 GeneticVariation disease BEFREE This work extends the phenotypic spectrum associated with LIG4 mutations, establishing that extreme growth retardation with microcephaly is a common presentation of bilallelic truncating mutations. 24123394 2014
Entrez Id: 3981
Gene Symbol: LIG4
LIG4
0.470 GeneticVariation disease BEFREE Hypomorphic LIG4 mutations in humans are associated with increased cellular radiosensitivity, microcephaly, facial dysmorphisms, growth retardation, developmental delay, and a variable degree of immunodeficiency. 20133615 2010
Entrez Id: 11284
Gene Symbol: PNKP
PNKP
0.470 GeneticVariation disease BEFREE Patient 2, homozygous for a frameshift variant (p.Ala429Thrfs*42), presented a phenotype partially consistent with MCSZ including microcephaly and developmental delay, but without seizures. 31436889 2019
Entrez Id: 11284
Gene Symbol: PNKP
PNKP
0.470 GeneticVariation disease BEFREE One of the syndromic forms of microcephaly is microcephaly, seizures and developmental delay (MCSZ) (OMIM #613402), a rare autosomal recessive neurodevelopmental disorder with a range of phenotypic severity, and known to be caused by mutations in the polynucleotide kinase 3' phosphatase (PNKP) gene. 27232581 2016
Entrez Id: 11284
Gene Symbol: PNKP
PNKP
0.470 GeneticVariation disease BEFREE Mutations in PNKP cause microcephaly, seizures and defects in DNA repair. 20118933 2010
Entrez Id: 11284
Gene Symbol: PNKP
PNKP
0.470 GeneticVariation disease BEFREE Mutations in TDP1 and APTX have been linked to Spinocerebellar ataxia with axonal neuropathy (SCAN1) and Ataxia-ocular motor apraxia 1 (AOA1), respectively, while mutations in PNKP are considered to be responsible for Microcephaly with seizures (MCSZ) and Ataxia-ocular motor apraxia 4 (AOA4). 27470939 2017
Entrez Id: 10084
Gene Symbol: PQBP1
PQBP1
0.450 GeneticVariation disease LHGDN Novel truncating mutations in the polyglutamine tract binding protein 1 gene (PQBP1) cause Renpenning syndrome and X-linked mental retardation in another family with microcephaly. 15024694 2004
Entrez Id: 84879
Gene Symbol: MFSD2A
MFSD2A
0.450 GeneticVariation disease BEFREE Here we show that a homozygous mutation affecting a highly conserved MFSD2A residue (p.Ser339Leu) is associated with a progressive microcephaly syndrome characterized by intellectual disability, spasticity and absent speech. 26005865 2015
Entrez Id: 84879
Gene Symbol: MFSD2A
MFSD2A
0.450 GeneticVariation disease BEFREE Two new studies show that inactivating mutations in MFSD2A, known to be expressed specifically at the blood-brain barrier, lead to microcephaly, thereby offering a simple and surprising solution to an old enigma. 26111510 2015
Entrez Id: 84879
Gene Symbol: MFSD2A
MFSD2A
0.450 GeneticVariation disease BEFREE Recent studies have implicated MFSD2A mutations in lethal and non-lethal microcephaly syndromes, with the severity correlating to the residual activity of the transporter. 30043326 2018
Entrez Id: 84879
Gene Symbol: MFSD2A
MFSD2A
0.450 GeneticVariation disease BEFREE Inactivating mutations in MFSD2A, required for omega-3 fatty acid transport in brain, cause a lethal microcephaly syndrome. 26005868 2015
Entrez Id: 10479
Gene Symbol: SLC9A6
SLC9A6
0.440 GeneticVariation disease BEFREE Of the genes in that region, we propose that SLC9A6 is the most likely to play an important role as mutations in this gene lead to Christianson syndrome, in which patients may have microcephaly and weight loss. 31583675 2020
Entrez Id: 10479
Gene Symbol: SLC9A6
SLC9A6
0.440 GeneticVariation disease BEFREE Mutations in SLC9A6 are associated with Christianson syndrome (OMIM 300243), a syndromic form of X-linked mental retardation (XLMR) characterized by microcephaly, severe global developmental delay, ataxia and seizures. 21932316 2011