Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 221662
Gene Symbol: RBM24
RBM24
0.010 AlteredExpression disease BEFREE We report the unprecedented finding that the conserved RNA-binding motif protein, RBM24, positively controls Sox2 mRNA stability and is necessary for optimal SOX2 mRNA and protein levels in development, perturbation of which causes ocular defects, including microphthalmia and anophthalmia. 31814023 2020
Entrez Id: 7471
Gene Symbol: WNT1
WNT1
0.010 Biomarker disease BEFREE Selective loss of neogenin in neural crest cells (as observed in Wnt1-Cre; Neof/f mice), but not neural stem cells (as observed in GFAP-Cre and Nestin-Cre; Neof/f mice), resulted in a dysregulation of neural crest cell migration or delamination, exhibiting features of PHPV-like pathology (e.g., elevated retrolental mass), unclosed retinal fissure, and microphthalmia. 31336386 2020
Entrez Id: 55755
Gene Symbol: CDK5RAP2
CDK5RAP2
0.010 Biomarker disease BEFREE Here we support the link between CDK5RAP2 and eye development by showing that most Cdk5rap2 mutant mice (an/an) exhibit eye malformations ranging from reduced size of one or both eyes (microphthalmia) to total absence of both eyes (anophthalmia). 31355417 2020
Entrez Id: 1414
Gene Symbol: CRYBB1
CRYBB1
0.010 GeneticVariation disease BEFREE <b>Conclusions</b>: We identified a novel missense mutation p.S93R in CRYBB1 in a Chinese family with autosomal dominant congenital cataracts and microphthalmia. 31566446 2020
Entrez Id: 4756
Gene Symbol: NEO1
NEO1
0.010 Biomarker disease BEFREE Selective loss of neogenin in neural crest cells (as observed in Wnt1-Cre; Neof/f mice), but not neural stem cells (as observed in GFAP-Cre and Nestin-Cre; Neof/f mice), resulted in a dysregulation of neural crest cell migration or delamination, exhibiting features of PHPV-like pathology (e.g., elevated retrolental mass), unclosed retinal fissure, and microphthalmia. 31336386 2020
Entrez Id: 406935
Gene Symbol: MIR143
MIR143
0.010 AlteredExpression disease BEFREE STTM‑miR‑143‑5p overexpression resulted in an increased expression of downstream melanogenesis genes including microphthalmia‑associated transcription factor (MITF), tyrosinase family members [tyrosinase (TYR) and tyrosinase‑related protein 1 (TYRP1)], melanophilin (MLPH), and Rab27a, thereby contributing to melanocyte pigmentation by promoting total alkali‑soluble melanogenesis (ASM) and eumelanin (EM) contents; conversely, STTM‑miR‑143‑5p overexpression resulted in decreased expression of the tyrosinase‑related protein 2 (TYRP2)/dopachrome tautomerase (DCT), which is responsible for decreased pheomelanin (PM) content in mouse melanocytes. 31322203 2019
Entrez Id: 290
Gene Symbol: ANPEP
ANPEP
0.010 Biomarker disease BEFREE We concluded that: (1) CD13 and GATA-3 immunostains may serve as a diagnostic aid in differentiating subtypes of RCC; (2) CD13 is always absent in chromophobe RCC and oncocytomas, whereas CD10 can be immunoexpressed in both; (3) CD13 should be included in a panel of antibodies to distinguish "proximal renal tumors" from "distal renal tumors" and between clear cell RCC versus microphthalmia transcription factor family translocations RCCs; and (4) when present, GATA-3 is specific for clear cell papillary RCC. 27556823 2019
Entrez Id: 10125
Gene Symbol: RASGRP1
RASGRP1
0.010 Biomarker disease BEFREE High-throughput transcriptome analysis reveals that the loss of Pten activates a novel NKX6-1/RASGRP1 regulatory module to rescue microphthalmia caused by Fgfr2-deficient lenses. 31691004 2019
Entrez Id: 2625
Gene Symbol: GATA3
GATA3
0.010 Biomarker disease BEFREE We concluded that: (1) CD13 and GATA-3 immunostains may serve as a diagnostic aid in differentiating subtypes of RCC; (2) CD13 is always absent in chromophobe RCC and oncocytomas, whereas CD10 can be immunoexpressed in both; (3) CD13 should be included in a panel of antibodies to distinguish "proximal renal tumors" from "distal renal tumors" and between clear cell RCC versus microphthalmia transcription factor family translocations RCCs; and (4) when present, GATA-3 is specific for clear cell papillary RCC. 27556823 2019
Entrez Id: 5176
Gene Symbol: SERPINF1
SERPINF1
0.010 Biomarker disease BEFREE Photoreceptor degeneration in microphthalmia (<i>Mitf</i>) mice: partial rescue by pigment epithelium-derived factor. 30651300 2019
Entrez Id: 57104
Gene Symbol: PNPLA2
PNPLA2
0.010 Biomarker disease BEFREE Photoreceptor degeneration in microphthalmia (<i>Mitf</i>) mice: partial rescue by pigment epithelium-derived factor. 30651300 2019
Entrez Id: 5873
Gene Symbol: RAB27A
RAB27A
0.010 AlteredExpression disease BEFREE STTM‑miR‑143‑5p overexpression resulted in an increased expression of downstream melanogenesis genes including microphthalmia‑associated transcription factor (MITF), tyrosinase family members [tyrosinase (TYR) and tyrosinase‑related protein 1 (TYRP1)], melanophilin (MLPH), and Rab27a, thereby contributing to melanocyte pigmentation by promoting total alkali‑soluble melanogenesis (ASM) and eumelanin (EM) contents; conversely, STTM‑miR‑143‑5p overexpression resulted in decreased expression of the tyrosinase‑related protein 2 (TYRP2)/dopachrome tautomerase (DCT), which is responsible for decreased pheomelanin (PM) content in mouse melanocytes. 31322203 2019
Entrez Id: 10730
Gene Symbol: YME1L1
YME1L1
0.010 Biomarker disease BEFREE YME1L-deficient mice manifest ocular dysfunction with microphthalmia and cataracts and develop deficiencies in locomotor activity due to specific degeneration of spinal cord axons, which relay proprioceptive signals from the hind limbs to the cerebellum. 30389680 2019
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.010 GeneticVariation disease BEFREE Changes in the activity of genes encoding the microphthalmia family (MiT family) of transcription factors and mammalian target of rapamycin complex 1 (<i>M</i><i>TORC1</i>) were also observed in the in vitro psoriasis model, indicating that the biogenesis pathway of this arm is inhibited. 31067781 2019
Entrez Id: 1409
Gene Symbol: CRYAA
CRYAA
0.010 GeneticVariation disease BEFREE A novel mutation in the CRYAA gene associated with congenital cataract and microphthalmia in a Chinese family. 30340470 2018
Entrez Id: 4038
Gene Symbol: LRP4
LRP4
0.010 AlteredExpression disease BEFREE The loss of Lrp4 resulted in an elevated incidence of microphthalmia and affected the mRNA expression of the members of bone morphogenetic protein, fibroblast growth factor, Sonic hedgehog, and WNT signaling pathways and of several pathogenic genes for microphthalmia. 30352686 2018
Entrez Id: 10256
Gene Symbol: CNKSR1
CNKSR1
0.010 Biomarker disease BEFREE The identified mutations (55 point mutations, 15 of which are novel) spanned 24 known disease genes, some of which have not or only very rarely been linked to microphthalmia (PAX6, SLC18A2, DSC3 and CNKSR1). 29450879 2018
Entrez Id: 51232
Gene Symbol: CRIM1
CRIM1
0.010 AlteredExpression disease BEFREE Based on our findings, we propose that tight regulation of Crim1 activity is required for maintenance of the lens epithelium, and its depletion leads to ectopic differentiation into fiber cells, dramatically altering lens structure and ultimately leading to microphthalmia and aphakia. 29458060 2018
Entrez Id: 1825
Gene Symbol: DSC3
DSC3
0.010 Biomarker disease BEFREE The identified mutations (55 point mutations, 15 of which are novel) spanned 24 known disease genes, some of which have not or only very rarely been linked to microphthalmia (PAX6, SLC18A2, DSC3 and CNKSR1). 29450879 2018
Entrez Id: 51222
Gene Symbol: ZNF219
ZNF219
0.010 Biomarker disease BEFREE Our study has also identified interesting candidate variants in 2 genes that have not been linked to human diseases (MYO10 and ZNF219), which we present here as novel candidates for microphthalmia. 29450879 2018
Entrez Id: 7218
Gene Symbol: TRP-AGG2-6
TRP-AGG2-6
0.010 AlteredExpression disease BEFREE In addition, resorcinol suppressed the expression of melanogenic gene microphthalmia-associated transcriptional factor (MITF) and its downstream target genes tyrosinase, tyrosinase-related protein (TRP)-1, and TRP-2. 29621941 2018
Entrez Id: 9670
Gene Symbol: IPO13
IPO13
0.010 Biomarker disease BEFREE Morpholino-oligonucleotide-induced knockdown of ipo13 in zebrafish caused dose-dependent microphthalmia and coloboma, which is highly similar to the ocular phenotypes in the patient. 29700284 2018
Entrez Id: 574513
Gene Symbol: MIR508
MIR508
0.010 AlteredExpression disease BEFREE Here, STTM-miR508-3p overexpression in alpaca melanocytes blocked the expression of miR-508-3p and up-regulated SOX6 expression at both the mRNA and protein levels, resulting in increasing the expression of key melanogenic genes, including cAMP responsive element (CRE) binding protein (CREB), MITF, tyrosinase (TYR) and tyrosinase-related protein 1 and 2 (TYRP1 and TYRP2). 30098430 2018
Entrez Id: 2271
Gene Symbol: FH
FH
0.010 GeneticVariation disease BEFREE In total, 212 tumors were identified, and these were classified as microphthalmia transcription factor (MiT) translocation RCC (MiT-RCC) (41.5%), papillary RCC (16.5%), renal medullary carcinoma (12.3%), chromophobe RCC (6.6%), clear cell RCC (3.3%), fumarate hydratase-deficient RCC (1.4%), and succinate dehydrogenase-deficient RCC (0.5%). 29905933 2018
Entrez Id: 84133
Gene Symbol: ZNRF3
ZNRF3
0.010 GeneticVariation disease BEFREE The membrane frizzled-related protein (MFRP) gene is involved in axial length (AL) regulation and MFRP mutations cause nanophthalmos; also, the hepatocyte growth factor (HGF) gene is reported to result in morphologic changes of the anterior segment and abnormal aqueous regulation that increases the risk of primary angle-closure glaucoma (PACG), while the zinc ring finger 3 (ZNRF3) gene is associated with AL. 30348125 2018