Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 Biomarker group BEFREE The relationship between HPV and p16 immunoreactivity in these neoplasms was also investigated, as it is generally assumed that in cervical neoplasms diffuse p16 expression is predictive of the presence of high-risk HPV. 20727021 2010
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 Biomarker group BEFREE Two tandem BRCA1 C-terminal (BRCT) domains are essential for the tumor suppression activity of BRCA1 and interact in a phosphorylation-dependent manner with proteins involved in DNA damage-induced checkpoint control, including the DNA helicase BACH1 and the CtBP-interacting protein (CtIP). 16101277 2005
Entrez Id: 472
Gene Symbol: ATM
ATM
0.500 Biomarker group BEFREE As mutations of the Ataxia Telangiectasia (A-T) gene, ATM, are frequent in T-PLL and as ATM seems to act as a tumour suppressor through a mechanism involving V(D)J recombination, we examined V(D)J recombination in T-PLL. 11054065 2000
Entrez Id: 472
Gene Symbol: ATM
ATM
0.500 Biomarker group BEFREE The DDR signaling as evaluated by phospho-epitope-specific antibodies against Ser139-phosphorylated H2A histone family member X (γH2AX), ataxia telangiectasia mutated (ATM), and ATM- and Rad3-related (ATR) was commonly activated in tumors with both moderate and high extent of accumulated genomic aberrations, the latter tumors showing a more frequent loss of ATM expression. 22926521 2013
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 Biomarker group BEFREE Instead, microsatellites defined a clear pattern of aneuploid genomic gains and losses among which, losses of BRCA1 at D17S855 and gains of plakoglobin at D17S846 significantly associated to grade III tumors and poor prognosis. 12883742 2004
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.500 AlteredExpression group BEFREE In summary, diffuse large B-cell lymphoma patients with either MYC/BCL6 rearrangements or MYC/BCL6 co-expression did not always have poorer prognosis; MYC expression levels should be evaluated simultaneously; and double-hit B-cell lymphoma needs to be refined based on the specific genetic abnormalities present in these tumors. 26573234 2016
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 Biomarker group BEFREE Thus we propose that phosphorylation of ARF in both immortalized and tumor cell lines could be a mechanism to escape ARF surveillance following proliferative and oncogenic stress. 23308265 2013
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 Biomarker group BEFREE It has been suggested that other genetic and/or environmental factors modify not only the appearance but also the age of onset and type of tumor in BRCA1/2-associated cases. 16419081 2006
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE We analyzed the effect of anti-EGFR monoclonal antibodies (mAbs; cetuximab and panitumumab) in combination with chemotherapeutic agents (docetaxel, cisplatin, and epirubicin) on EGFR-expressing TNBC cell lines that have different mutation statuses for one oncogene (KRAS) and two tumor suppressor genes (PTEN and BRCA1). 27864890 2017
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE 'BRCAness' is a term used to describe cancer cells that behave similarly to tumors with BRCA1 or BRCA2 mutations. 29620483 2018
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 Biomarker group BEFREE Inhibition of DUB-activity mediated by these compounds downregulates cell-cycle promoters, e.g., cyclin D1 and upregulates tumor suppressors p53, p27(Kip1) and p16(Ink4A). 22510564 2012
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.500 AlteredExpression group BEFREE Taken together, our findings support a model in which c-MYC-driven transcriptional events, combined with epigenetic mechanisms, direct and regulate the expression of ABC genes with possible implications in tumor malignancy and drug efflux in CML. 21693596 2011
Entrez Id: 1436
Gene Symbol: CSF1R
CSF1R
0.500 AlteredExpression group BEFREE Loss of methylation and associated overexpression of the CSF 1 receptor (CSF1R) was seen in a majority of tumors and was driven by an alternative, endogenous viral promoter in a subset of samples. 30046005 2018
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 Biomarker group BEFREE Classification of missense variants of unknown significance in BRCA1 based on clinical and tumor information. 17279547 2007
Entrez Id: 472
Gene Symbol: ATM
ATM
0.500 GeneticVariation group BEFREE Instead, the mutation patterns of the tumour suppressor TP53 (which encodes p53), ataxia telangiectasia mutated (ATM) and cyclin-dependent kinase inhibitor 2A (CDKN2A; which encodes p16INK4A and p14ARF) support the oncogene-induced DNA replication stress model, which attributes genomic instability and TP53 and ATM mutations to oncogene-induced DNA damage. 20177397 2010
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 PosttranslationalModification group BEFREE We previously found p16 promoter methylation in DNA in the sera of 13 colorectal cancer patients out of 44 (30%) whose tumor DNA exhibited the methylation, using methylation-specific PCR (MSP). 12460469 2002
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 PosttranslationalModification group BEFREE Interestingly, 66.7% of patients harbored methylated BRCA1 promoter in both WBC and tumors. 25403427 2014
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 AlteredExpression group BEFREE Furthermore, Tbx3 expression was found to be suppressed by AFLL when the expression of tumor suppressor genes p14 and p53 were activated. 20702496 2011
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.500 Biomarker group BEFREE 907-916) demonstrate an essential role for endogenous Myc proteins in maintaining the tumor microenvironment, providing an unexpected molecular explanation for addiction to Myc. 21536730 2011
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 Biomarker group BEFREE Analysis of mutations with immune markers revealed that ADCY8 and PIK3CA mutations were associated with markedly decreased tumoral PD-L1 expression, LUSCs with PIK3CA mutations exhibited elevated CD45ro levels and CDKN2A-mutant tumors displayed an up-regulated immune response. 28177435 2017
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 Biomarker group BEFREE The breast and ovarian cancer-specific tumor suppressor BRCA1, along with its heterodimer partner BRCA1-associated RING domain protein (BARD1), plays important roles in DNA repair, centrosome regulation, and transcription. 24289923 2014
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Sequencing of BRCA1 amplified from genomic DNA of lymphocytes and microdissected ovarian tumor cells of a familial ovarian cancer patient revealed three, rare heterozygous DNA variations (2418delA, 233G-->A, and IVS1-10T-->C) in both tumor and constitutional (lymphocyte) DNA. 10459348 1999
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 AlteredExpression group BEFREE This pathway was recapitulated by deregulated Wnt/T-cell factor signaling, with elevation of the tumor suppressor p14ARF, and reduced expression of the p53 antagonist, MDM2. 15958644 2005
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 Biomarker group BEFREE The breast cancer susceptibility protein 1 (BRCA1), a tumor suppressor, can modulate cellular antioxidant response and DNA repair. 30014904 2018
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 Biomarker group BEFREE This study identifies a novel protein with tumor suppressor-like behaviors and functional links to ARF-MDM2-p53 signaling. 17110379 2007