Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.400 Biomarker group CTD_human Histological comparison of the effects of the splotch gene and retinoic acid on the closure of the mouse neural tube. 3293260 1988
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.400 Therapeutic group CTD_human Histological comparison of the effects of the splotch gene and retinoic acid on the closure of the mouse neural tube. 3293260 1988
Entrez Id: 174
Gene Symbol: AFP
AFP
0.100 Biomarker group BEFREE The diagnosis of fetal triploidy should be considered when there is a very high maternal serum alpha-fetoprotein and no ultrasound evidence of open neural tube defect, ventral wall defect, or any other explanation. 2473468 1989
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.600 Biomarker group CTD_human Cranial effects of retinoic acid in the loop-tail (Lp) mutant mouse. 2373757 1990
Entrez Id: 923
Gene Symbol: CD6
CD6
0.010 AlteredExpression group BEFREE These results do not support the idea that NTDs occurring above and below vertebral level T12 have a different genetic basis. 1956058 1991
Entrez Id: 174
Gene Symbol: AFP
AFP
0.100 Biomarker group BEFREE However, a separate screening protocol using AFP at 15-18 weeks gestation would still be required for effective detection of neural tube defects. 8284287 1993
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 Biomarker group BEFREE The gene for 5,10 methylenetetrahydrofolate reductase, an enzyme important in homocysteine metabolism, was studied in relation to NTDs. 8542260 1995
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.400 Biomarker group BEFREE Our results support the hypothesis that mutations in the gene for PAX3 can predispose to NTD, but also show that, in general, mutations within or near the conserved domains of the PAX3 protein are only very infrequently involved in familial NTD. 7897628 1995
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.400 Biomarker group BEFREE The observation that the PAX3 homozygote in humans may allow life at least in early infancy and does not cause neural tube defects was unexpected, since, in all the mutations known in mice (splotch), homozygosity has led to severe neural tube defects and intrauterine or neonatal death. 7726174 1995
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.400 GeneticVariation group BEFREE Seventeen US families and 14 Dutch families with more than one affected person with NTD were collected and 194 people (50 affected) from both data sets were genotyped using the PAX3 polymorphic marker. 7783169 1995
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE It has several possible causes: heterozygosity for rare loss of function mutations in the genes for 5,10-methylene tetrahydrofolate reductase (MTHFR) or cystathionine-beta-synthase (CBS); dietary insufficiency of vitamin co-factors B6, B12 or folates; or homozygosity for a common 'thermolabile' mutation in the MTHFR gene which has also been associated with vascular disease and NTDs. 8935478 1996
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE 5,10 Methylenetetrahydrofolate reductase genetic polymorphism as a risk factor for neural tube defects. 8826441 1996
Entrez Id: 4548
Gene Symbol: MTR
MTR
0.100 GeneticVariation group BEFREE We discuss the possibility that a mild deficiency of methionine synthase activity could be associated with mild hyperhomocysteinemia, a risk factor for cardiovascular disease and possibly neural tube defects. 8968737 1996
Entrez Id: 4548
Gene Symbol: MTR
MTR
0.100 GeneticVariation group BEFREE In addition, they suggest directly that mutations in methionine synthase can lead to elevated homocysteine, implicated both in neural tube defects and in cardiovascular diseases. 8968736 1996
Entrez Id: 875
Gene Symbol: CBS
CBS
0.090 GeneticVariation group BEFREE It has several possible causes: heterozygosity for rare loss of function mutations in the genes for 5,10-methylene tetrahydrofolate reductase (MTHFR) or cystathionine-beta-synthase (CBS); dietary insufficiency of vitamin co-factors B6, B12 or folates; or homozygosity for a common 'thermolabile' mutation in the MTHFR gene which has also been associated with vascular disease and NTDs. 8935478 1996
Entrez Id: 102724560
Gene Symbol: CBSL
CBSL
0.090 GeneticVariation group BEFREE It has several possible causes: heterozygosity for rare loss of function mutations in the genes for 5,10-methylene tetrahydrofolate reductase (MTHFR) or cystathionine-beta-synthase (CBS); dietary insufficiency of vitamin co-factors B6, B12 or folates; or homozygosity for a common 'thermolabile' mutation in the MTHFR gene which has also been associated with vascular disease and NTDs. 8935478 1996
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.080 GeneticVariation group BEFREE We document a spectrum of neural tube defects in XPC p53 mutant embryos. 8994835 1996
Entrez Id: 5075
Gene Symbol: PAX1
PAX1
0.050 GeneticVariation group BEFREE However, the detection of a mutation in PAX1 suggests that, in principle, this gene can act as a risk factor for human NTD. 8863157 1996
Entrez Id: 7508
Gene Symbol: XPC
XPC
0.010 Biomarker group BEFREE We document a spectrum of neural tube defects in XPC p53 mutant embryos. 8994835 1996
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.590 GeneticVariation group BEFREE The thermolabile variant of methylenetetrahydrofolate reductase (MTHFR) is not a major risk factor for neural tube defect in American Caucasians. The NTD Collaborative Group. 10732818 1997
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE The thermolabile variant of methylenetetrahydrofolate reductase (MTHFR) is not a major risk factor for neural tube defect in American Caucasians. The NTD Collaborative Group. 10732818 1997
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE Is the common 677C-->T mutation in the methylenetetrahydrofolate reductase gene a risk factor for neural tube defects? A meta-analysis. 9068801 1997
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE In contrast to previous reports, we found the same distribution in fetuses with NTD and controls, which suggests that the MTHFR C677T mutation cannot be regarded as a genetic risk factor for NTD. 9341863 1997
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE Although the 677C-->T mutation in the 5,10-methylenetetrahydrofolate reductase (MTHFR) gene is a risk factor for NTDs, it only partly explains the elevated homocysteine levels in mothers of children with NTDs. 9327028 1997
Entrez Id: 6497
Gene Symbol: SKI
SKI
0.300 Biomarker group CTD_human Mice lacking the ski proto-oncogene have defects in neurulation, craniofacial, patterning, and skeletal muscle development. 9284043 1997