Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
0.700 GeneticVariation disease BEFREE Juvenile neuronal ceroid lipofuscinosis (JNCL) is a lysosomal storage disease caused by autosomal recessive mutations in ceroid lipofuscinosis 3 (CLN3). 29964296 2019
Entrez Id: 2896
Gene Symbol: GRN
GRN
0.100 GeneticVariation disease BEFREE Homozygous GRN mutation carriers develop neuronal ceroid lipofuscinosis (NCL), an earlier-onset lysosomal storage disorder caused by severe lysosomal dysfunction. 29929528 2018
Entrez Id: 23400
Gene Symbol: ATP13A2
ATP13A2
0.400 Biomarker disease BEFREE To determine if loss of one functional Atp13a2 allele can serve as a risk factor for disease, we have now assessed heterozygous Atp13a2 knockout mice for key features of NCL. 29859891 2018
Entrez Id: 2896
Gene Symbol: GRN
GRN
0.100 GeneticVariation disease BEFREE However, growing evidence suggests a role for PGRN in the lysosome-most striking being that homozygous GRN mutation leads to neuronal ceroid lipofuscinosis, a lysosomal storage disease. 29744576 2018
Entrez Id: 1200
Gene Symbol: TPP1
TPP1
0.700 Biomarker disease BEFREE Neural stem cells for disease modeling and evaluation of therapeutics for infantile (CLN1/PPT1) and late infantile (CLN2/TPP1) neuronal ceroid lipofuscinoses. 29631617 2018
Entrez Id: 5538
Gene Symbol: PPT1
PPT1
0.400 Biomarker disease BEFREE Neural stem cells for disease modeling and evaluation of therapeutics for infantile (CLN1/PPT1) and late infantile (CLN2/TPP1) neuronal ceroid lipofuscinoses. 29631617 2018
Entrez Id: 1200
Gene Symbol: TPP1
TPP1
0.700 AlteredExpression disease BEFREE Interestingly, TPP1 activity in serum only consisted of a neutral form, no acidic form, and was not deficient in any NCL 2 patient. 29599076 2018
Entrez Id: 5538
Gene Symbol: PPT1
PPT1
0.400 GeneticVariation disease BEFREE In neutral conditions, pH 6.0, the PPT1 enzyme activities in NCL 1 patients showed rather higher residual activities and intermediate activities in heterozygotes in NCL 1, which was probably caused by mutated proteins in three cases with NCL 1 patients. 29599076 2018
Entrez Id: 825
Gene Symbol: CAPN3
CAPN3
0.020 Biomarker disease BEFREE In neutral conditions, pH 6.0, the PPT1 enzyme activities in NCL 1 patients showed rather higher residual activities and intermediate activities in heterozygotes in NCL 1, which was probably caused by mutated proteins in three cases with NCL 1 patients. 29599076 2018
Entrez Id: 1203
Gene Symbol: CLN5
CLN5
0.400 Biomarker disease BEFREE One of the most significantly depleted lysosomal proteins was Cln5 protein that underlies another distinct neuronal ceroid lipofuscinosis disorder. 29514215 2018
Entrez Id: 256471
Gene Symbol: MFSD8
MFSD8
0.400 Biomarker disease BEFREE Defects in the MFSD8 gene encoding the lysosomal membrane protein CLN7 lead to CLN7 disease, a neurodegenerative lysosomal storage disorder belonging to the group of neuronal ceroid lipofuscinoses. 29514215 2018
Entrez Id: 2055
Gene Symbol: CLN8
CLN8
0.400 GeneticVariation disease BEFREE This is the fourth variant identified in CLN8 that causes NCL in dogs. 29446145 2018
Entrez Id: 2055
Gene Symbol: CLN8
CLN8
0.400 Biomarker disease BEFREE Our findings expand the variant diversity of CLN8 and demonstrate the tremendous diagnosis value of targeted next-generation sequencing for pediatric NCLs. 29422019 2018
Entrez Id: 23400
Gene Symbol: ATP13A2
ATP13A2
0.400 GeneticVariation disease BEFREE Loss of function mutations in the gene ATP13A2 are associated with Kufor-Rakeb Syndrome and Neuronal Ceroid Lipofuscinosis, the former designated as an inherited form of Parkinson's disease (PD). 29407413 2018
Entrez Id: 2896
Gene Symbol: GRN
GRN
0.100 Biomarker disease BEFREE Here, we address these issues using an AAV vector (AAV-<i>Grn</i>) to deliver progranulin in <i>Grn</i><sup>-/-</sup> mice (both male and female), which model aspects of NCL and FTD pathology, developing lysosomal dysfunction, lipofuscinosis, and microgliosis. 29378861 2018
Entrez Id: 2896
Gene Symbol: GRN
GRN
0.100 AlteredExpression disease BEFREE In this study, we evaluated whether selective depletion of progranulin expression in myeloid-lineage cells, including microglia, causes NCL-like neuropathology or neuroinflammation in mice. 29149899 2017
Entrez Id: 1203
Gene Symbol: CLN5
CLN5
0.400 Biomarker disease BEFREE Ceroid lipofuscinosis neuronal 5 (CLN5) is a member of a family of proteins that are linked to neuronal ceroid lipofuscinosis (NCL). 29128403 2018
Entrez Id: 8722
Gene Symbol: CTSF
CTSF
0.030 GeneticVariation disease BEFREE Kufs disease type B (also termed CLN13), an adult-onset form of neuronal ceroid lipofuscinosis (NCL), is genetically heterogeneous and challenging to diagnose. 29120254 2018
Entrez Id: 1509
Gene Symbol: CTSD
CTSD
0.300 Biomarker disease BEFREE This functional relationship between PGRN and cathepsin D provides a possible explanation for overlapping NCL-like pathology observed in patients with mutations in PGRN or CTSD, the gene encoding cathepsin D. Together, our work identifies PGRN as an activator of lysosomal cathepsin D activity, and suggests that decreased cathepsin D activity due to loss of PGRN contributes to both FTD and NCL pathology in a dose-dependent manner. 29036611 2017
Entrez Id: 2896
Gene Symbol: GRN
GRN
0.100 Biomarker disease BEFREE This functional relationship between PGRN and cathepsin D provides a possible explanation for overlapping NCL-like pathology observed in patients with mutations in PGRN or CTSD, the gene encoding cathepsin D. Together, our work identifies PGRN as an activator of lysosomal cathepsin D activity, and suggests that decreased cathepsin D activity due to loss of PGRN contributes to both FTD and NCL pathology in a dose-dependent manner. 29036611 2017
Entrez Id: 23435
Gene Symbol: TARDBP
TARDBP
0.030 Biomarker disease BEFREE Using iPSC-derived human cortical neurons from FTD patients harboring PGRN mutations, we demonstrate that PGRN mutant neurons exhibit decreased nuclear TDP-43 and increased insoluble TDP-43, as well as enlarged electron-dense vesicles, lipofuscin accumulation, fingerprint-like profiles and granular osmiophilic deposits, suggesting that both FTD and NCL-like pathology are present in PGRN patient neurons as compared to isogenic controls. 29036611 2017
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
0.700 Biomarker disease BEFREE To identify molecular modulators of synaptic stability and degeneration, we have used the Cln3 <sup>-/-</sup> mouse model of a juvenile form of NCL. 28963550 2017
Entrez Id: 5538
Gene Symbol: PPT1
PPT1
0.400 GeneticVariation disease BEFREE CLN1 disease (OMIM #256730) is an early childhood ceroid-lipofuscinosis associated with mutated <i>CLN1</i>, whose product Palmitoyl-Protein Thioesterase 1 (PPT1) is a lysosomal enzyme involved in the removal of palmitate residues from S-acylated proteins. 28878621 2017
Entrez Id: 4691
Gene Symbol: NCL
NCL
0.090 GeneticVariation disease BEFREE To date, 12 mutations in 8 different genes orthologous to the human NCL genes have been found to underlie NCL in a variety of dog breeds. 28860089 2017
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
0.700 Biomarker disease BEFREE To identify candidate biomarkers, we analyzed autopsy brain and matching CSF samples from controls and three genetically distinct NCLs due to deficiencies in palmitoyl protein thioesterase 1 (CLN1 disease), tripeptidyl peptidase 1 (CLN2 disease), and CLN3 protein (CLN3 disease). 28792770 2017