Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.010 AlteredExpression disease BEFREE We have previously shown that MYC is involved in the differential gene expression observed in Noonan syndrome patients associated with an increased incidence of JMML. 31657576 2020
Entrez Id: 369
Gene Symbol: ARAF
ARAF
0.010 GeneticVariation disease BEFREE A ternary complex comprised of SHOC2, MRAS, and PP1 (SHOC2 complex) functions as a RAF S259 holophosphatase and gain-of-function mutations in SHOC2, MRAS, and PP1 that promote complex formation are found in Noonan syndrome. 31213532 2019
Entrez Id: 92170
Gene Symbol: MTG1
MTG1
0.010 GeneticVariation disease BEFREE We show that the NS-causing RRAS2 variants affect highly conserved residues localized around the nucleotide binding pocket of the GTPase and are predicted to variably affect diverse aspects of RRAS2 biochemical behavior, including nucleotide binding, GTP hydrolysis, and interaction with effectors. 31130282 2019
Entrez Id: 5598
Gene Symbol: MAPK7
MAPK7
0.010 Biomarker disease BEFREE RNA-sequencing reveals genes with abnormal expression in RAF1 mutant iPSC-derived cardiomyocytes and identifies subsets of genes dysregulated by aberrant MEK1/2 or ERK5 pathways that could contribute to the NS-associated HCM. 31163979 2019
Entrez Id: 58499
Gene Symbol: ZNF462
ZNF462
0.010 GeneticVariation disease BEFREE Using facial analysis technology, a computer algorithm applying deep learning was able to accurately differentiate individuals with ZNF462 loss of function variants from individuals with Noonan syndrome and healthy controls. 31361404 2019
Entrez Id: 2904
Gene Symbol: GRIN2B
GRIN2B
0.010 Biomarker disease BEFREE Consistent with altered GluN2B function, we identify GluN2B Y1252 as an NS-associated SHP2 substrate both in vitro and in vivo. 30089263 2018
Entrez Id: 406971
Gene Symbol: MIR195
MIR195
0.010 GeneticVariation disease BEFREE Our findings indicated that miR-195 inhibited WT and L613V RAF-1 induced hyperactive osteoblast differentiation in MC3T3-E1 cells by targeting RAF-1. miR-195 might be a novel therapeutic agent for the treatment of L613V-induced bone deformity in Noonan syndrome. 29197556 2018
Entrez Id: 6473
Gene Symbol: SHOX
SHOX
0.010 GeneticVariation disease BEFREE A clinical picture of NS with mesomelic short stature makes the diagnosis even more difficult as haploinsufficiency and complete loss of function of SHOX gene are associated with the typical differentiation and proliferation of chondrocytes, leading to mesomelic appearance. 30294303 2018
Entrez Id: 2902
Gene Symbol: GRIN1
GRIN1
0.010 Biomarker disease BEFREE We find that mice bearing an NS-associated SHP2 allele (NS mice) have selectively impaired Schaffer collateral-CA1 NMDA (N-methyl-D-aspartate) receptor (NMDAR)-mediated neurotransmission and that residual NMDAR-mediated currents decay faster in NS mice because of reduced contribution of GluN1:GluN2B diheteromers. 30089263 2018
Entrez Id: 8440
Gene Symbol: NCK2
NCK2
0.010 Biomarker disease BEFREE These results establish SHP2 and Nck2 as NMDAR regulatory proteins and strongly suggest that NMDAR dysfunction contributes to NS cognitive deficits. 30089263 2018
Entrez Id: 6037
Gene Symbol: RNASE3
RNASE3
0.010 GeneticVariation disease BEFREE Our findings indicated that miR-195 inhibited WT and L613V RAF-1 induced hyperactive osteoblast differentiation in MC3T3-E1 cells by targeting RAF-1. miR-195 might be a novel therapeutic agent for the treatment of L613V-induced bone deformity in Noonan syndrome. 29197556 2018
Entrez Id: 268
Gene Symbol: AMH
AMH
0.010 AlteredExpression disease BEFREE Lower AMH and inhibin B levels were found in NS-PTPN11 patients, whereas these markers did not differ from healthy children in SOS1 patients. 30325180 2018
Entrez Id: 11122
Gene Symbol: PTPRT
PTPRT
0.010 Biomarker disease BEFREE Shp2 is a classical non-receptor protein tyrosine phosphatase (PTP) involved in many human diseases such as Noonan syndrome and tumors, and identified as a potential therapeutic target. 27939989 2017
Entrez Id: 161742
Gene Symbol: SPRED1
SPRED1
0.010 GeneticVariation disease BEFREE These syndromes include Noonan syndrome (NS), Noonan syndrome with multiple lentigines (NSML or LEOPARD syndrome), neurofibromatosis type 1 (NF1), Costello syndrome (CS), cardio-facio-cutaneous (CFC) syndrome, neurofibromatosis type 1-like syndrome (NFLS or Legius syndrome) and capillary malformation-arteriovenous malformation syndrome (CM-AVM). 28643916 2017
Entrez Id: 90
Gene Symbol: ACVR1
ACVR1
0.010 GeneticVariation disease BEFREE This analysis identified activating SOS1 mutations associated with Noonan syndrome as significantly altered in melanoma and the first kinase-activating mutations in ACVR1 associated with adult tumors. 27304678 2016
Entrez Id: 54797
Gene Symbol: MED18
MED18
0.010 Biomarker disease BEFREE RIT1 is one of the major genes for NS.The RIT1-associated phenotype differs gradually from other NS subtypes, with a high prevalence of cardiovascular manifestations, especially hypertrophic cardiomyopathy, and lymphatic problems.Genet Med 18 12, 1226-1234. 27101134 2016
Entrez Id: 6348
Gene Symbol: CCL3
CCL3
0.010 Biomarker disease BEFREE This study reveals the critical contribution of Ptpn11 mutations in the bone marrow microenvironment to leukaemogenesis and identifies CCL3 as a potential therapeutic target for controlling leukaemic progression in Noonan syndrome and for improving stem cell transplantation therapy in Noonan-syndrome-associated leukaemias. 27783593 2016
Entrez Id: 5923
Gene Symbol: RASGRF1
RASGRF1
0.010 Biomarker disease BEFREE Here, we report that missense mutations altering Son of Sevenless, Drosophila, homolog 2 (SOS2), which encodes a RAS guanine nucleotide exchange factor, occur in a small percentage of subjects with NS. 26173643 2015
Entrez Id: 407008
Gene Symbol: MIR223
MIR223
0.010 Biomarker disease BEFREE Reducing miR-223's function in NS/JMML hiPSCs normalized myelogenesis. 26456833 2015
Entrez Id: 6776
Gene Symbol: STAT5A
STAT5A
0.010 Biomarker disease BEFREE Here, we report that hematopoietic cells differentiated from human induced pluripotent stem cells (hiPSCs) harboring NS/JMML-causing PTPN11 mutations recapitulated JMML features. hiPSC-derived NS/JMML myeloid cells exhibited increased signaling through STAT5 and upregulation of miR-223 and miR-15a. 26456833 2015
Entrez Id: 56731
Gene Symbol: SLC2A4RG
SLC2A4RG
0.010 GeneticVariation disease BEFREE Intriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K). 24522193 2014
Entrez Id: 6197
Gene Symbol: RPS6KA3
RPS6KA3
0.010 GeneticVariation disease BEFREE In addition, a nonsense mutation in RPS6KA3 was found in one patient initially diagnosed with NS whose diagnosis was later revised to Coffin-Lowry syndrome. 25049390 2014
Entrez Id: 147409
Gene Symbol: DSG4
DSG4
0.010 Biomarker disease BEFREE While the first available clinical records outlined a relatively homogeneous phenotype in NS/LAH, the present data emphasize that the phenotype spectrum associated with this invariant mutation is wider than previously recognized. 25331583 2014
Entrez Id: 9181
Gene Symbol: ARHGEF2
ARHGEF2
0.010 GeneticVariation disease BEFREE Intriguingly, CIIA failed to inhibit the Ras-specific GEF activity of Noonan-syndrome-associated SOS1 mutants (M269R, R552G, W729L and E846K). 24522193 2014
Entrez Id: 2002
Gene Symbol: ELK1
ELK1
0.010 GeneticVariation disease BEFREE Luciferase assays in NIH 3T3 cells showed that five RIT1 alterations identified in children with Noonan syndrome enhanced ELK1 transactivation. 23791108 2013