Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.020 AlteredExpression group BEFREE To clarify the roles of the p53-MDM2-p14(ARF) cell cycle regulation system in oncogenesis and cytodifferentiation of odontogenic tumors, p53 gene status and expression of p53, MDM2, and p14(ARF) proteins was analyzed in ameloblastomas as well as tooth germs. 15078490 2004
Entrez Id: 4193
Gene Symbol: MDM2
MDM2
0.020 Biomarker group BEFREE To clarify the roles of the p53-MDM2-p14(ARF) cell cycle regulation system in oncogenesis and cytodifferentiation of odontogenic tumors, p53 gene status and expression of p53, MDM2, and p14(ARF) proteins was analyzed in ameloblastomas as well as tooth germs. 15078490 2004
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.020 GeneticVariation group BEFREE A review of the biological behavior of this recognized aggressive pathological entity of the jaws and a contemporary outline of the molecular (growth factors, p53, PCNA and Ki-67, bcl-2) and genetic (PTCH, SHH) alterations associated with this odontogenic neoplasm provides a better understanding of the mechanisms involved in its development and strengthen the current concept that the KCOT should, indeed, be regarded as a neoplasm. 20004133 2010
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.020 GeneticVariation group BEFREE KRAS mutation at codon 12 and the presence of MAPK/ERK pathway proteins were detected suggesting their association with tumorigenesis of adenomatoid odontogenic tumors. 30294831 2019
Entrez Id: 9313
Gene Symbol: MMP20
MMP20
0.020 Biomarker group BEFREE Human matrix metalloproteinase-20 (MMP-20, enamelysin) fragments the enamel-specific protein amelogenin and has been shown to be synthesized exclusively by odontoblasts and ameloblasts and in certain odontogenic tumors. 11706946 2001
Entrez Id: 5595
Gene Symbol: MAPK3
MAPK3
0.020 AlteredExpression group BEFREE To clarify the roles of rat sarcoma (Ras)/mitogen-activated protein kinase (MAPK) signaling pathway in oncogenesis and cytodifferentiation of odontogenic tumors, K-Ras gene status and expression of Ras, Raf1, MAPK/extracellular signal-regulated kinase (ERK) kinase (MEK)1, and ERK1/2 proteins were analyzed in ameloblastomas as well as in tooth germs. 15200485 2004
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.020 GeneticVariation group BEFREE We aimed to assess KRAS mutations in the hotspot codons 12, 13, and 61 in a large cohort of adenomatoid odontogenic tumors and to test the association of these mutations with clinical (age, site, tumor size, follicular/extrafollicular subtypes) and histopathological parameters. 30643167 2019
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.020 Biomarker group BEFREE No significant difference in p16INK4a staining was noted between odontogenic cysts and the listed odontogenic tumors (chi-square, P = .540). 31680334 2020
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.020 GeneticVariation group BEFREE BRAF V600E was the most common mutation, found in 62% of ameloblastomas and in ameloblastic fibromas/fibrodentinomas but not in other odontogenic tumors. 24993163 2014
Entrez Id: 64386
Gene Symbol: MMP25
MMP25
0.020 Biomarker group BEFREE Human matrix metalloproteinase-20 (MMP-20, enamelysin) fragments the enamel-specific protein amelogenin and has been shown to be synthesized exclusively by odontoblasts and ameloblasts and in certain odontogenic tumors. 11706946 2001
Entrez Id: 7431
Gene Symbol: VIM
VIM
0.020 Biomarker group BEFREE Comparative genomic hybridization (CGH) and immunohistochemistry, performed as diagnostic adjuncts, revealed in the odontogenic tumor and the pulmonary lesions a very similar pattern of chromosomal aberrations (loss of 9, gains of 14q, 19 and 20 in both, and additional loss of 6 in the odontogenic tumor) and the same pattern of expression (positive for cytokeratin 5, 6, 8, 19 and negative for cytokeratin 18, epithelial membrane antigen, and vimentin), differing from that of MPMN. 11355179 2001
Entrez Id: 10117
Gene Symbol: ENAM
ENAM
0.020 AlteredExpression group BEFREE We also found that the expression of enamelin, a marker of differentiated ameloblasts, was induced, suggesting that AMBN promotes odontogenic tumor differentiation. 19648121 2009
Entrez Id: 10117
Gene Symbol: ENAM
ENAM
0.020 AlteredExpression group BEFREE In view of the present results, it is interesting that previous studies have indicated that although ameloblastoma, a non-mineralized odontogenic tumor, transcribes amelogenin mRNA, amelogenin (and enamelin) proteins are not expressed in this tissue. 11062999 1998
Entrez Id: 7431
Gene Symbol: VIM
VIM
0.020 AlteredExpression group BEFREE In situ and Northern hybridization was carried out to study cytokeratin (Ck) 1, 4, 8, 18, and 19 and vimentin (Vim) gene expression in 13- to 24-week-old human fetal tooth germs, including overlying oral epithelium and odontogenic tumors (N = 6) of epithelial (ameloblastoma) and epithelial-ectomesenchymal (ameloblastic fibroma) origin. 1721670 1991
Entrez Id: 5595
Gene Symbol: MAPK3
MAPK3
0.020 AlteredExpression group BEFREE RAS mutations are known to activate the MAPK pathway, and we show that adenomatoid odontogenic tumors express phosphorylated ERK1/2. 30643167 2019
Entrez Id: 54959
Gene Symbol: ODAM
ODAM
0.020 Biomarker group BEFREE Odontogenic ameloblast-associated protein nature of the amyloid found in calcifying epithelial odontogenic tumors and unerupted tooth follicles. 18484335 2008
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.020 AlteredExpression group BEFREE miR-15a/16-1 influences BCL2 expression in keratocystic odontogenic tumors. 22684875 2012
Entrez Id: 54959
Gene Symbol: ODAM
ODAM
0.020 Biomarker group BEFREE We previously have communicated our discovery that the amyloid associated with calcifying epithelial odontogenic tumors is composed of N-terminal fragments of the structurally novel odontogenic ameloblast-associated protein designated ODAM. 18472969 2008
Entrez Id: 64853
Gene Symbol: AIDA
AIDA
0.010 Biomarker group BEFREE Immunohistochemical validation of chosen putative biomarkers revealed axin interaction partner and dorsalization-antagonist (AIDA), known as a protein that blocks activation of JNK signalling pathway, as a differential biomarker for KCOT lesions on an independent cohort of KCOT tissue samples in comparison with most prevalent intra-oseal lesions inflammatory odontogenic cysts. 25040847 2015
Entrez Id: 6515
Gene Symbol: SLC2A3
SLC2A3
0.010 Biomarker group BEFREE The aim of this study was to evaluate the immunoexpression of glucose transporters 1 (GLUT-1) and 3 (GLUT-3) in keratocystic odontogenic tumors associated with Gorlin syndrome (SKOTs) and non-syndromic keratocystic odontogenic tumors (NSKOTs), and to establish correlations with the angiogenic index. 28489118 2017
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.010 AlteredExpression group BEFREE VEGF was considered to be an important mediator of angiogenesis in these epithelial odontogenic tumors, and up-regulation of VEGF might be associated with neoplastic or malignant changes of odontogenic epithelial cells. 11896820 2002
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.010 AlteredExpression group BEFREE To clarify the role of p53 homologs in oncogenesis and cytodifferentiation of odontogenic tumors, expression of p63 and p73 was analyzed in ameloblastomas as well as tooth germs. 15752257 2005
Entrez Id: 3852
Gene Symbol: KRT5
KRT5
0.010 Biomarker group BEFREE Comparative genomic hybridization (CGH) and immunohistochemistry, performed as diagnostic adjuncts, revealed in the odontogenic tumor and the pulmonary lesions a very similar pattern of chromosomal aberrations (loss of 9, gains of 14q, 19 and 20 in both, and additional loss of 6 in the odontogenic tumor) and the same pattern of expression (positive for cytokeratin 5, 6, 8, 19 and negative for cytokeratin 18, epithelial membrane antigen, and vimentin), differing from that of MPMN. 11355179 2001
Entrez Id: 2048
Gene Symbol: EPHB2
EPHB2
0.010 Biomarker group BEFREE KRAS mutation at codon 12 and the presence of MAPK/ERK pathway proteins were detected suggesting their association with tumorigenesis of adenomatoid odontogenic tumors. 30294831 2019
Entrez Id: 3880
Gene Symbol: KRT19
KRT19
0.010 Biomarker group BEFREE It was confirmed that CK19 is a good marker for benign odontogenic tumors, such as AM, but it is variably expressed in malignant cases. 28390135 2017