Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1588
Gene Symbol: CYP19A1
CYP19A1
0.200 GeneticVariation disease BEFREE Thus, a male carrying homozygous mutations in the ER-alpha gene and two males with homozygous mutations in the aromatase gene had osteopenia, unfused epiphyses, and elevated indices of bone turnover. 11730247 2001
Entrez Id: 1588
Gene Symbol: CYP19A1
CYP19A1
0.200 GeneticVariation disease BEFREE Inactivating mutations of the aromatase gene are associated with decreased bone mineral density in both men and women. 11344237 2001
Entrez Id: 1588
Gene Symbol: CYP19A1
CYP19A1
0.200 GeneticVariation disease BEFREE Estrogen and the estrogen receptor (ER) play a central role in bone metabolism as illustrated by the loss of bone mass after menopause and the osteopenia in individuals with defect aromatase or ER. 11092403 2000
Entrez Id: 4041
Gene Symbol: LRP5
LRP5
0.140 GeneticVariation disease BEFREE A non-synonymous SNP in the LRP5 gene was associated with decreased bone mineral density (rs3736228, p=6.3x10(-12) for lumbar spine and p=1.9x10(-4) for femoral neck) and an increased risk of both osteoporotic fractures (odds ratio [OR] 1.3, 95% CI 1.09-1.52, p=0.002) and osteoporosis (OR 1.3, 1.08-1.63, p=0.008). 18455228 2008
Entrez Id: 4853
Gene Symbol: NOTCH2
NOTCH2
0.140 GeneticVariation disease BEFREE Notch2(Q2319X) heterozygous mutants were smaller and had shorter femurs than controls; and at 1 month of age they exhibited cancellous and cortical bone osteopenia. 26627824 2016
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.140 GeneticVariation disease BEFREE More widespread Dkk1 expression (driven by the Col1A1 3.6 kb promoter) yielded osteopenia with forelimb deformities and hairlessness, while expression restricted to osteoblasts (driven by the Col1A1 2.3 kb promoter) induced severe osteopenia without limb defects or alopecia. 16730481 2006
Entrez Id: 4041
Gene Symbol: LRP5
LRP5
0.140 GeneticVariation disease BEFREE Both disuse stimuli induced significant bone loss in WT mice, but Lrp5 A214V and G171V were partially or fully protected from the bone loss that normally results from disuse. 26554834 2015
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.140 GeneticVariation disease BEFREE Association between the MscI polymorphism of COL1A1 and rate of lumbar spine bone loss was observed with significant gene-environment interaction related to dietary calcium intake (p = 0.0006). 11316004 2001
Entrez Id: 4853
Gene Symbol: NOTCH2
NOTCH2
0.140 GeneticVariation disease BEFREE Mice harboring Notch2 mutations replicating Hajdu-Cheney syndrome (Notch2<sup>tm1.1ECan</sup>) have osteopenia and exhibit an increase in splenic marginal zone B cells with a decrease in follicular B cells. 29545197 2018
Entrez Id: 4041
Gene Symbol: LRP5
LRP5
0.140 GeneticVariation disease BEFREE The aim of the study was to evaluate the frequency of genotypes and alleles of single nucleotide polymorphism (SNP) rs4988321 and rs312009 of LRP5 in Polish postmenopausal women with osteopenia (n = 109) and osteoporosis (n = 333). 29963786 2019
Entrez Id: 4041
Gene Symbol: LRP5
LRP5
0.140 GeneticVariation disease BEFREE In addition to the ocular features, LRP5 mutations can cause osteopenia and osteoporosis. 25323851 2015
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.140 GeneticVariation disease BEFREE COL1A1 Sp1 polymorphism predicts perimenopausal and early postmenopausal spinal bone loss. 11547832 2001
Entrez Id: 2200
Gene Symbol: FBN1
FBN1
0.120 GeneticVariation disease BEFREE Low peak bone mass results from failure to achieve peak bone mass genetic potential, primarily due to bone loss caused by a variety of conditions or processes occurring at younger ages than usual. 29673833 2018
Entrez Id: 2200
Gene Symbol: FBN1
FBN1
0.120 GeneticVariation disease BEFREE This study advances our understanding of molecular mechanisms underlying the pathogenesis of bone loss/abnormal skeletogenesis in human diseases caused by mutations in FBN1. 23037987 2012
Entrez Id: 5626
Gene Symbol: PROP1
PROP1
0.110 GeneticVariation disease BEFREE Studying untreated patients with either isolated GH deficiency due to GH gene deletion, patients with multiple pituitary hormone deficiency due to PROP-1 gene mutation and patients with isolated IGF-I deficiency due to deletions or mutations of the GH receptor gene (Laron syndrome); it was found, that these patients despite signs of early aging (wrinkled skin, obesity, insulin resistance and osteopenia) have a long life span reaching ages of 80-90 years. 15621211 2005
Entrez Id: 5831
Gene Symbol: PYCR1
PYCR1
0.110 GeneticVariation disease BEFREE Although the disease resulting from recessive mutations in that gene has been recently designated ARCL2B, some clinical features, such as prognathism, elongated and lax face, osteopenia and limitation of skin wrinkling to the dorsum of hands and feet, in the patients reported here as well as in others reported with PYCR1 mutations, are generally more common in geroderma osteodysplasticum resulting from recessive GORAB mutations. 21204221 2011
Entrez Id: 51119
Gene Symbol: SBDS
SBDS
0.110 GeneticVariation disease BEFREE The present study assessed prevalence and determinants of osteopenia and osteoporosis in patients with SDS and disease-causing mutations in the SBDS gene. 17920346 2007
Entrez Id: 92344
Gene Symbol: GORAB
GORAB
0.110 GeneticVariation disease BEFREE While the patients with GORAB mutations have severe osteopenia, the patients with PYCR1 mutations have severe mental retardation. 21204221 2011
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.110 GeneticVariation disease CLINVAR A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders. 26938784 2016
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.110 GeneticVariation disease BEFREE Here we show that a 52-year-old postmenopausal woman with severe osteopenia and a compression fracture of a thoracic vertebra had a mutation in the gene for the alpha 2(I) chain of type I collagen (COL1A2) similar to mutations that cause OI. cDNA was prepared from the woman's skin fibroblast RNA and assayed for the presence of a mutation by treating DNA heteroduplexes with carbodiimide. 2052622 1991
Entrez Id: 26229
Gene Symbol: B3GAT3
B3GAT3
0.110 GeneticVariation disease BEFREE Functional validation of novel compound heterozygous variants in B3GAT3 resulting in severe osteopenia and fractures: expanding the disease phenotype. 27871226 2016
Entrez Id: 632
Gene Symbol: BGLAP
BGLAP
0.100 GeneticVariation disease BEFREE The purpose of this study was to investigate whether the previously demonstrated polymorphism of the osteocalcin gene was related to bone mineral density (BMD; g/cm2) or osteopenia in a group of 97 healthy Caucasian adolescent females (aged 16.9 +/- 1.2 years, mean +/- SD). 11199188 2000
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Genetic polymorphisms in the vitamin D receptor (VDR) gene are associated with parameters of bone homeostasis and with diseases in which bone loss is a cardinal sign, in particular osteoporosis. 10505806 1999
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Decreased bone mineral density (BMD) has been documented in adults with Cushing disease (CD), and allelic variants of the vitamin D receptor (VDR) gene have been associated with osteopenia. 22570981 2012
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE The BsmI VDR gene polymorphism is associated with osteopenia in thalassaemia. 11122154 2000