Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 31
Gene Symbol: ACACA
ACACA
0.010 Biomarker disease BEFREE ACC = adrenal cortical carcinoma; APA = aldosterone-producing adenoma; APCC = aldosterone-producing cell cluster; CAH = congenital adrenal hyperplasia; CT = computed tomography; DOTATATE = [<sup>68</sup>Ga]-DOTA(0)-Tyr(3)-octreotate; FDG = fluorodeoxyglucose; FH = fumarate hydratase; MR = miner-alocorticoid; MDH2 = malate dehydrogenase 2; PCC = pheochromocytoma; PET = positron emission tomography; PGL = paraganglioma; SCS = subclinical cortisol-secreting; SDHB = succinate dehydrogenase subunit B; TCGA = The Cancer Genome Atlas. 28332880 2017
Entrez Id: 181
Gene Symbol: AGRP
AGRP
0.010 Biomarker disease BEFREE These data (1) confirm that ART acts as a differentiation factor for autonomic (chiefly sympathoadrenal but also parasympathetic) neurons, (2) suggest a role for ART overexpression in the genesis of pheochromocytomas and paragangliomas, and (3) indicate that ART is not a suitable therapy for peripheral neuropathy. 15204970 2005
Entrez Id: 9049
Gene Symbol: AIP
AIP
0.010 GeneticVariation disease BEFREE This editorial summarizes some of these advances: the identification of the AIP, and the PDE11A and PDE8B genes by genome-wide association (GWA) studies as predisposing genes for pituitary and adrenal tumours, respectively, the discovery of p27 mutations in a new form of MEN similar to MEN type 1 (MEN 1) that is now known as MEN 4, the molecular investigations of Carney triad (CT), a disorder that associates paragangliomas (PGLs), gastrointestinal stromal tumour (GISTs), and pulmonary chondromas (PCH) with pheochromocytomas and adrenocortical adenomas and other lesions, and the molecular elucidation of the association of GISTs with paragangliomas (Carney-Stratakis syndrome) that is now known to be because of SDHB, SDHC, and SDHD mutations. 19522821 2009
Entrez Id: 9048
Gene Symbol: ARTN
ARTN
0.010 Biomarker disease BEFREE These data (1) confirm that ART acts as a differentiation factor for autonomic (chiefly sympathoadrenal but also parasympathetic) neurons, (2) suggest a role for ART overexpression in the genesis of pheochromocytomas and paragangliomas, and (3) indicate that ART is not a suitable therapy for peripheral neuropathy. 15204970 2005
Entrez Id: 472
Gene Symbol: ATM
ATM
0.110 CausalMutation disease CLINVAR
Entrez Id: 472
Gene Symbol: ATM
ATM
0.110 Biomarker disease BEFREE In this study, we analyzed promoter hypermethylation of the following genes in 49 cases of primary gastric lymphoma (PGL): ATM, p16INK4a(CDKN2A), hMLH1, MGMT, DAPK, and CDH1(ECAD). 17852707 2007
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.130 Biomarker disease HPO
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.130 GeneticVariation disease BEFREE Telomerase Activation and ATRX Mutations Are Independent Risk Factors for Metastatic Pheochromocytoma and Paraganglioma. 30301828 2019
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.130 GeneticVariation disease BEFREE Whole-exome sequencing identifies somatic ATRX mutations in pheochromocytomas and paragangliomas. 25608029 2015
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.130 GeneticVariation disease BEFREE In conclusion, somatic variants affecting ATRX may play a driver role in sporadic PCC/PGL. 27209355 2016
Entrez Id: 8314
Gene Symbol: BAP1
BAP1
0.330 Biomarker disease CTD_human Inference on germline BAP1 mutations and asbestos exposure from the analysis of familial and sporadic mesothelioma in a high-risk area. 25231345 2015
Entrez Id: 8314
Gene Symbol: BAP1
BAP1
0.330 GeneticVariation disease BEFREE History revealed that his father had died of paraganglioma, which is also associated with BAP1 mutations. 29974497 2018
Entrez Id: 8314
Gene Symbol: BAP1
BAP1
0.330 GeneticVariation disease BEFREE Our findings further support BAP1 as a melanoma susceptibility gene and extend the potential predisposition spectrum to paraganglioma. 22889334 2012
Entrez Id: 8314
Gene Symbol: BAP1
BAP1
0.330 AlteredExpression disease BEFREE This study documents that the loss of BAP1 nuclear expression is quite a frequent finding in PCC/PGL, suggesting a possible role of BAP1 in the pathogenesis of these tumors. 31734934 2019
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 Biomarker disease BEFREE Operative specimens of three patients who underwent surgery for a paraganglioma of the nasal cavity (one case) or paranasal sinuses (two cases) were investigated by routine histology, quantitative DNA analysis, and immunohistochemical assessment of proliferation markers (i.e., Proliferating Cell Nuclear Antigen, PCNA; Ki67-MIB-1), the expression of cell-surface antigens, which reflect the tumor-stroma interaction (i.e., CD 44 v0.4/5 and 6, CD 54, CD 106), oncogene products (nm-23; p53), and bcl-2 as a marker of apoptosis. 11197119 2001
Entrez Id: 9790
Gene Symbol: BMS1
BMS1
0.010 Biomarker disease BEFREE ACC = adrenal cortical carcinoma; APA = aldosterone-producing adenoma; APCC = aldosterone-producing cell cluster; CAH = congenital adrenal hyperplasia; CT = computed tomography; DOTATATE = [<sup>68</sup>Ga]-DOTA(0)-Tyr(3)-octreotate; FDG = fluorodeoxyglucose; FH = fumarate hydratase; MR = miner-alocorticoid; MDH2 = malate dehydrogenase 2; PCC = pheochromocytoma; PET = positron emission tomography; PGL = paraganglioma; SCS = subclinical cortisol-secreting; SDHB = succinate dehydrogenase subunit B; TCGA = The Cancer Genome Atlas. 28332880 2017
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.010 GeneticVariation disease BEFREE Absence of BRAF mutation in pheochromocytoma and paraganglioma. 28043156 2019
Entrez Id: 160140
Gene Symbol: C11orf65
C11orf65
0.100 CausalMutation disease CLINVAR
Entrez Id: 796
Gene Symbol: CALCA
CALCA
0.020 Biomarker disease BEFREE We provide a classifying rule for differential diagnosis that combines negativity or low staining for calcitonin gene-related protein (histologic score, <10) or calcitonin (histologic score, <50) together with positivity of any of NADH dehydrogenase 1 alpha subcomplex, 4-like 2; cytochrome c oxidase subunit IV isoform 2; or vesicular monoamine transporter 2 to predict paragangliomas, showing a prediction error of 0%. 22209341 2012
Entrez Id: 796
Gene Symbol: CALCA
CALCA
0.020 Biomarker disease BEFREE IHC was positive for chromogranin, synaptophysin, and S-100 and negative for calcitonin in all five thyroid paragangliomas, whereas the three excluded candidate tumors stained positive for pan-cytokeratin, a marker excluding endocrine tumors. 25595276 2015
Entrez Id: 801
Gene Symbol: CALM1
CALM1
0.010 Biomarker disease BEFREE All other paragangliomas (58/60, 96.7%) were negative for keratin AE1/AE3 and CAM 5.2. 31442521 2019
Entrez Id: 805
Gene Symbol: CALM2
CALM2
0.010 Biomarker disease BEFREE All other paragangliomas (58/60, 96.7%) were negative for keratin AE1/AE3 and CAM 5.2. 31442521 2019
Entrez Id: 808
Gene Symbol: CALM3
CALM3
0.010 Biomarker disease BEFREE All other paragangliomas (58/60, 96.7%) were negative for keratin AE1/AE3 and CAM 5.2. 31442521 2019
Entrez Id: 79823
Gene Symbol: CAMKMT
CAMKMT
0.010 Biomarker disease BEFREE All other paragangliomas (58/60, 96.7%) were negative for keratin AE1/AE3 and CAM 5.2. 31442521 2019
Entrez Id: 595
Gene Symbol: CCND1
CCND1
0.110 Biomarker disease HPO