Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7412
Gene Symbol: VCAM1
VCAM1
0.020 Biomarker disease BEFREE Patients belonged to three main entities: rheumatoid arthritis (RA, <i>n</i> = 32), collagen diseases (CD, <i>n</i> = 56) also including systemic sclerosis (SSc, <i>n</i> = 11), and other autoimmune diseases (<i>n</i> = 12). sICAM-1 was similar among groups. sELAM-1 was elevated by 1.9-fold in only in SSc. sVCAM-1 was elevated by 3.1-fold in RA and by 3.3-fold in CD and in other autoimmune diseases by 3.4-fold. 29487871 2018
Entrez Id: 10911
Gene Symbol: UTS2
UTS2
0.010 GeneticVariation disease BEFREE There were significant associations between the genotype and allele frequencies of UTS2 gene Thr21Met polymorphism and cases with diffuse or limited SSc, systemic or lung involvement, finger flexion deformity, pitting scars at the fingertips, positive anticentromere, or positive antitopoisomerase 1 antibody groups. 22045841 2012
Entrez Id: 10813
Gene Symbol: UTP14A
UTP14A
0.010 Biomarker disease BEFREE Three SSU processome components and their related human diseases will be explored in this review: hUTP4/Cirhin, implicated in North American Indian childhood cirrhosis (NAIC); UTP14, implicated in infertility, ovarian cancer, and scleroderma; and EMG1, implicated in Bowen-Conradi syndrome (BCS). 24240090 2014
Entrez Id: 8615
Gene Symbol: USO1
USO1
0.010 GeneticVariation disease BEFREE These results suggest the possible role of TAP gene polymorphisms in the genetic susceptibility to SSc. 16112028 2005
Entrez Id: 7390
Gene Symbol: UROS
UROS
0.100 Biomarker disease HPO
Entrez Id: 7389
Gene Symbol: UROD
UROD
0.100 Biomarker disease HPO
Entrez Id: 105375355
Gene Symbol: UPK3B
UPK3B
0.010 AlteredExpression disease BEFREE Levels of p35 are markedly elevated in both SSc skin biopsies and explanted SSc fibroblasts, as well as in fibrotic skin in mice. 29535807 2018
Entrez Id: 10277
Gene Symbol: UBE4B
UBE4B
0.010 Biomarker disease BEFREE In these studies, we define Ufd2 (a novel E4 polyubiquitylating enzyme) as a new autoantigen in scleroderma, and show that it regulates chromosome condensation and separation during mitosis in human cells. 15611659 2004
Entrez Id: 9354
Gene Symbol: UBE4A
UBE4A
0.010 Biomarker disease BEFREE In these studies, we define Ufd2 (a novel E4 polyubiquitylating enzyme) as a new autoantigen in scleroderma, and show that it regulates chromosome condensation and separation during mitosis in human cells. 15611659 2004
Entrez Id: 7297
Gene Symbol: TYK2
TYK2
0.110 GeneticVariation disease GWASCAT Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases. 30573655 2019
Entrez Id: 7297
Gene Symbol: TYK2
TYK2
0.110 GeneticVariation disease BEFREE Interestingly, dependence and allelic combination analyses showed that the strong association observed for V362F with SSc, corresponded to a synthetic association dependent on the effect of the three previously mentioned TYK2 missense variants. 26338038 2016
Entrez Id: 7295
Gene Symbol: TXN
TXN
0.010 Biomarker disease BEFREE These results demonstrate that the transplantation of Trx-1-overexpressing BMSCs restored normal skin tissue in a mouse model of bleomycin-induced SSc, highlighting the therapeutic potential of engineered BMSCs for treating SSc. 28132855 2017
Entrez Id: 7291
Gene Symbol: TWIST1
TWIST1
0.020 AlteredExpression disease BEFREE CD31+CD102+ ECs isolated from SSc lungs expressed high levels of mesenchymal cell-specific genes (type I collagen, type III collagen, and fibronectin), EC-specific genes (type IV collagen and VE-cadherin), profibrotic genes (transforming growth factor β1 and connective tissue growth factor), and genes encoding EndoMT-related transcription factors (TWIST1 and SNAI2). 26360820 2016
Entrez Id: 7291
Gene Symbol: TWIST1
TWIST1
0.020 AlteredExpression disease BEFREE Here, we aimed to investigate the role of TWIST1 for the activation of resident fibroblasts in systemic sclerosis (SSc). 27113414 2017
Entrez Id: 11334
Gene Symbol: TUSC2
TUSC2
0.010 Biomarker disease BEFREE In the RHC subgroup (n=28), mean (m)PAP and pulmonary vascular resistance at 50 W increased significantly (p=0.02 and p=0.002, respectively), but resting mPAP was unchanged.Scleroderma patients without PAH develop a mild but significant deterioration of pulmonary exercise haemodynamics and exercise capacity over a 4-year follow-up period, indicating a progression of pulmonary vascular disease. 28705939 2017
Entrez Id: 84790
Gene Symbol: TUBA1C
TUBA1C
0.010 AlteredExpression disease BEFREE Anti-tubulin-α-1C autoantibody levels were determined by enzyme-linked immunosorbent assay (ELISA) in 128 SLE patients, 38 primary Sjögren's syndrome (pSS) patients, and 106 healthy controls (HCs).White blood cell (WBC) count, erythrocyte sedimentation rate (ESR), C-reactive protein (CRP), IgM, IgG, C3, C4, RF, ANA, dsDNA, Sm, AnuA, aCL, anti-SSA, and anti-SSB were measured by standard laboratory techniques. 29427009 2018
Entrez Id: 7273
Gene Symbol: TTN
TTN
0.010 Biomarker disease BEFREE Using a human autoimmune scleroderma serum that identifies a chromosomal protein in human cells and Drosophila embryos, we cloned the corresponding Drosophila gene that encodes the homologue of vertebrate titin based on protein size, sequence similarity, developmental expression and subcellular localization. 9548712 1998
Entrez Id: 23617
Gene Symbol: TSSK2
TSSK2
0.020 Biomarker disease BEFREE Expression of TNFRSF12A (the TWEAK receptor/fibroblast growth factor-inducible 14) was elevated in skin from patients with fibroproliferative SSc and the skin of Tsk2/+ mice. 26945694 2016
Entrez Id: 23617
Gene Symbol: TSSK2
TSSK2
0.020 Biomarker disease BEFREE The high frequency of anti-Scl70 and anti-centromere autoantibodies indicates that Tsk2/+ mice display some humoral immune alterations which are similar to those found in patients with SSc. 16081813 2005
Entrez Id: 83942
Gene Symbol: TSSK1B
TSSK1B
0.050 Biomarker disease BEFREE The best characterized scleroderma animal model is the type 1 tight skin mouse (Tsk1). 15246024 2004
Entrez Id: 83942
Gene Symbol: TSSK1B
TSSK1B
0.050 Biomarker disease BEFREE The TSK1 mouse model of SSc bears an in-frame duplication of the Fibrillin-1 gene (FBN1) which results in a larger than normal protein that is more susceptible to proteolysis. 12384286 2002
Entrez Id: 83942
Gene Symbol: TSSK1B
TSSK1B
0.050 GeneticVariation disease BEFREE Immunolocalization confirmed increased expression of MCP-3 in the dermis of 4 of 5 Tsk1 skin samples and 14 of 28 lesional SSc skin samples, compared with that in matched healthy mice (n = 5) and human controls (n = 11). 12847692 2003
Entrez Id: 83942
Gene Symbol: TSSK1B
TSSK1B
0.050 Biomarker disease BEFREE Only selected features of SSc-related cardiomyopathy were observed in the mice with chronic GVHD and TSK-1 mice. 25371068 2015
Entrez Id: 83942
Gene Symbol: TSSK1B
TSSK1B
0.050 Biomarker disease BEFREE A multilocus 2-cM haplotype was identified on human chromosome 15q homologous to the murine tsk1 region, which showed a significantly increased frequency in SSc cases compared with controls. 9778214 1998
Entrez Id: 728137
Gene Symbol: TSPY3
TSPY3
0.010 Biomarker disease BEFREE Real time quantitative polymerase chain reaction targeting the Y chromosome specific sequence DYS14 was employed to test DNA extracted from peripheral blood mononuclear cells of 26 women with systemic sclerosis and 23 healthy women who had never given birth to a son. 15550532 2005