Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7319
Gene Symbol: UBE2A
UBE2A
0.130 GeneticVariation disease BEFREE Taken together, the UBE2A deficiency syndrome in male patients with a mutation in or a deletion of UBE2A is characterized by ID, absent speech, seizures, urogenital anomalies, frequently including a small penis, and skin abnormalities, which include generalized hirsutism, low posterior hairline, myxedematous appearance, widely spaced nipples, and hair whorls. 21108393 2010
Entrez Id: 9839
Gene Symbol: ZEB2
ZEB2
0.130 GeneticVariation disease BEFREE Genotype-phenotype analysis confirmed that ZFHX1B deletions and stop mutations result in a recognizable facial dysmorphism with associated severe mental retardation and variable malformations such as Hirschsprung disease and congenital heart defects. 16053902 2005
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.130 GeneticVariation disease BEFREE A novel missense mutation of the L1CAM gene (Xq28) is described in an adult patient affected with severe mental retardation, spastic paraparesis, adducted thumbs, agenesis of corpus callosum and microcephaly (L1 disease). 16816908 2006
Entrez Id: 23096
Gene Symbol: IQSEC2
IQSEC2
0.130 GeneticVariation disease BEFREE Expanding the phenotype of IQSEC2 mutations: truncating mutations in severe intellectual disability. 23674175 2014
Entrez Id: 1756
Gene Symbol: DMD
DMD
0.130 GeneticVariation disease BEFREE Because the DMD gene is located at Xp21.2, which is one breakpoint of the inv(X), and because its defects are rarely associated with severe mental retardation, the other clinical features of this patient were deemed likely to be associated with the opposite breakpoint at Xq22. 12145744 2002
Entrez Id: 5053
Gene Symbol: PAH
PAH
0.130 GeneticVariation disease BEFREE To test the applicability of this DNA delivery system for the correction of phenylketonuria, a metabolic disorder that causes severe mental retardation in children, we have delivered the human phenylalanine hydroxylase (PAH) gene to hepatocytes derived from a PAH-deficient mouse strain and demonstrated complete reconstitution of enzymatic activity. 8384712 1993
Entrez Id: 9839
Gene Symbol: ZEB2
ZEB2
0.130 GeneticVariation disease BEFREE Mowat-Wilson syndrome (MOWS) is caused by de novo heterozygous mutation at ZEB2 (SIP1, ZFHX1B) gene, and exhibit moderate to severe intellectual disability (ID), a characteristic facial appearance, epilepsy and other congenital anomalies. 26319231 2015
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.130 GeneticVariation disease BEFREE Common clinical features associated with ATRX mutations include severe mental retardation, characteristic facial anomalies and variable degrees of urogenital defects and alpha-thalassemia. 11823444 2002
Entrez Id: 23096
Gene Symbol: IQSEC2
IQSEC2
0.130 GeneticVariation disease BEFREE Variants in IQSEC2 cause moderate to severe intellectual disability in males and a variable phenotype in females because this gene escapes from X-chromosome inactivation. 26733290 2016
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.130 GeneticVariation disease BEFREE Hundreds of L1CAM gene mutations have been shown to be associated with congenital hydrocephalus, severe intellectual disability, aphasia, and motor symptoms. 27001749 2016
Entrez Id: 9839
Gene Symbol: ZEB2
ZEB2
0.130 GeneticVariation disease BEFREE ZFHX1B mutations cause a complex developmental phenotype characterized by severe mental retardation (MR) and multiple congenital defects. 15006694 2004
Entrez Id: 1756
Gene Symbol: DMD
DMD
0.130 GeneticVariation disease BEFREE Complete skipping of exon 66 due to novel mutations of the dystrophin gene was identified in two Japanese families of Duchenne muscular dystrophy with severe mental retardation. 10722962 2000
Entrez Id: 9378
Gene Symbol: NRXN1
NRXN1
0.130 GeneticVariation disease BEFREE We report on patients with heterozygous defects in CNTNAP2 or NRXN1 associated with severe intellectual disability, which has only been reported for recessive defects before. 21827697 2011
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.130 GeneticVariation disease BEFREE Mutations in ATRX give rise to characteristic developmental abnormalities including severe mental retardation, facial dysmorphism, urogenital abnormalities and alpha-thalassaemia. 10742099 2000
Entrez Id: 7319
Gene Symbol: UBE2A
UBE2A
0.130 GeneticVariation disease BEFREE X-linked intellectual disability type Nascimento (XIDTN), caused by mutations in ubiquitin-conjugating enzyme E2A (UBE2A) gene, is characterized by moderate to severe intellectual disability, impaired speech, urogenital anomalies, skin abnormalities, and dysmorphic facial features. 31566921 2019
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.130 GeneticVariation disease BEFREE All the mutations were L1CAM loss-of-function mutations, and all the patients had severe hydrocephalus and severe mental retardation. 17328266 2006
Entrez Id: 26047
Gene Symbol: CNTNAP2
CNTNAP2
0.120 GeneticVariation disease BEFREE We report on patients with heterozygous defects in CNTNAP2 or NRXN1 associated with severe intellectual disability, which has only been reported for recessive defects before. 21827697 2011
Entrez Id: 26047
Gene Symbol: CNTNAP2
CNTNAP2
0.120 GeneticVariation disease BEFREE Whereas the established synaptic role of NRXN1 suggests that synaptic defects contribute to the associated neuropsychiatric disorders and to severe MR as reported here, evidence for a synaptic role of the CNTNAP2-encoded protein CASPR2 has so far been lacking. 19896112 2009
Entrez Id: 1641
Gene Symbol: DCX
DCX
0.120 GeneticVariation disease BEFREE X linked lissencephaly and subcortical band heterotopia (XLIS/SBH) is a disorder of cortical development, which causes classical lissencephaly with severe mental retardation and epilepsy in hemizygous males and SBH associated with milder mental retardation and epilepsy in heterozygous females. 9783706 1998
Entrez Id: 57688
Gene Symbol: ZSWIM6
ZSWIM6
0.120 GeneticVariation disease BEFREE Additionally, a putatively causal point mutation in ZSWIM6 has been identified in several cases of acromelic frontonasal dysostosis with severe intellectual disability. 28433741 2017
Entrez Id: 10479
Gene Symbol: SLC9A6
SLC9A6
0.120 GeneticVariation disease BEFREE Christianson syndrome (CS) is caused by mutations in SLC9A6 and is characterized by severe intellectual disability, absent speech, microcephaly, ataxia, seizures, and behavioral abnormalities. 24285247 2014
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.120 GeneticVariation disease BEFREE Although the patients with TSC2 mutations tend to exhibit relatively severe mental retardation in comparison to those with TSC1 mutations, a genotype-phenotype correlation could not yet be established. 10570911 1999
Entrez Id: 5063
Gene Symbol: PAK3
PAK3
0.120 GeneticVariation disease BEFREE PAK3 mutations responsible for severe intellectual disability and callosal agenesis inhibit cell migration. 31843706 2020
Entrez Id: 170302
Gene Symbol: ARX
ARX
0.120 GeneticVariation disease BEFREE Mutations in the CDKL5 gene (also known as STK9) have recently been shown to cause early onset epilepsy and severe mental retardation (ISSX or West syndrome). 16015284 2005
Entrez Id: 259232
Gene Symbol: NALCN
NALCN
0.120 GeneticVariation disease BEFREE Gain-of-function mutations in the human NALCN gene cause encephalopathy and severe intellectual disability. 31601786 2019