Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.470 GeneticVariation disease BEFREE Our findings confirm and supplement existing literature that TSC2 mutation is likely to be associated with a more severe, earlier presenting TSC phenotype, including infantile spasms. 24917535 2014
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.470 GeneticVariation disease BEFREE Most of the patients with TSC2 mutations who developed infantile spasms exhibited subsequent epilepsy (13/14; 93%). 25498131 2014
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.470 GeneticVariation disease BEFREE Tuberous sclerosis (TS) is caused by mutations in at least two genes, TSC1 and TSC2; 75% of cases are sporadic; 60% of patients have epilepsy, manifested in 50% of them as infantile spasms. 11579436 2001
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.470 GeneticVariation disease BEFREE However, missense mutations located in the central region of TSC2 (exons 23-33) were associated with a significantly reduced incidence of IS. 22867869 2013
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.470 GeneticVariation disease BEFREE In summary, increased tuber count is strongly associated with infantile spasms and a TSC2 gene mutation. 16417883 2005
Entrez Id: 6709
Gene Symbol: SPTAN1
SPTAN1
0.460 GeneticVariation disease BEFREE Progressive diffuse brain atrophy in West syndrome with marked hypomyelination due to SPTAN1 gene mutation. 22656320 2013
Entrez Id: 6709
Gene Symbol: SPTAN1
SPTAN1
0.460 GeneticVariation disease BEFREE By screening SPTAN1 in 95 patients with idiopathic ID, we found a de novo in-frame mutation (p.Q2202del) in the same C-terminal domain in a patient with mild generalized epilepsy and pontocerebellar atrophy, but without IS, hypomyelination, or other brain structural defects, allowing us to define the core phenotype associated with these C-terminal SPTAN1 mutations. 22258530 2012
Entrez Id: 6326
Gene Symbol: SCN2A
SCN2A
0.460 GeneticVariation disease BEFREE Deletions of SCN2A and SCN3A genes in a patient with West syndrome and autistic spectrum disorder. 29929112 2018
Entrez Id: 6326
Gene Symbol: SCN2A
SCN2A
0.460 GeneticVariation disease BEFREE Trial of Modified Atkins Diet for other cases of infantile spasm with similar SCN2A mutations is worthwhile pursuing. 25459969 2015
Entrez Id: 6709
Gene Symbol: SPTAN1
SPTAN1
0.460 GeneticVariation disease BEFREE The major clinical features of SPTAN1 mutations include epileptic encephalopathy with hypsarrhythmia, no visual attention, acquired microcephaly, spastic quadriplegia and severe intellectual disability. 25631096 2015
Entrez Id: 6709
Gene Symbol: SPTAN1
SPTAN1
0.460 GeneticVariation disease BEFREE De novo in-frame deletions and duplications in the SPTAN1 gene, encoding the non-erythrocyte αII spectrin, have been associated with severe West syndrome with hypomyelination and pontocerebellar atrophy. 29050398 2017
Entrez Id: 6326
Gene Symbol: SCN2A
SCN2A
0.460 GeneticVariation disease BEFREE SCN2A mutations have been described in a very broad spectrum of clinical phenotypes including benign (familial) neonatal/infantile seizures and early infantile epileptic encephalopathies (EIEE) as Ohtahara syndrome (OS), Dravet syndrome (DS), epilepsy of infancy with migrating focal seizures and West syndrome (WS). 30415926 2019
Entrez Id: 6709
Gene Symbol: SPTAN1
SPTAN1
0.460 GeneticVariation disease BEFREE Dominant-negative mutations in alpha-II spectrin cause West syndrome with severe cerebral hypomyelination, spastic quadriplegia, and developmental delay. 20493457 2010
Entrez Id: 6326
Gene Symbol: SCN2A
SCN2A
0.460 GeneticVariation disease BEFREE Missense mutations in SCN2A (p.Leu1342Pro) and KCNQ2 (p.Ala306Thr) were found in two patients with no history of epilepsy before the onset of ISs. 26138355 2016
Entrez Id: 6326
Gene Symbol: SCN2A
SCN2A
0.460 GeneticVariation disease BEFREE The simultaneous presence of an SCN2A mutation and bitemporal hypometabolism in this patient with infantile spasms suggests a plausible hippocampal origin. 23827426 2013
Entrez Id: 6326
Gene Symbol: SCN2A
SCN2A
0.460 GeneticVariation disease BEFREE SCN2A mutation in an infant presenting with migrating focal seizures and infantile spasm responsive to a ketogenic diet. 29625812 2018
Entrez Id: 6487
Gene Symbol: ST3GAL3
ST3GAL3
0.420 GeneticVariation disease BEFREE For this purpose we generated induced pluripotent stem cell (iPSC) lines from fibroblasts obtained from a patient with West syndrome, carrying a variant in exon 12 (c.958G>C, p.(Ala320Pro)) of ST3GAL3, and a healthy sibling, using lentiviral reprogramming. iPSCs and cortical neurons derived thereof were analysed by lectin blots, mRNA sequencing, adherence assays, and FACS. 30089820 2018
Entrez Id: 2904
Gene Symbol: GRIN2B
GRIN2B
0.420 GeneticVariation disease BEFREE De novo gain of function mutations in GRIN2B encoding the GluN2B subunit of the N-methyl-d-aspartate (NMDA) receptor have been linked with epileptic encephalopathies, including infantile spasms. 28533163 2017
Entrez Id: 6487
Gene Symbol: ST3GAL3
ST3GAL3
0.420 GeneticVariation disease BEFREE Using homozygosity mapping followed by exome sequencing we identified an ST3GAL3 mutation in three infants with West syndrome. 23252400 2013
Entrez Id: 2904
Gene Symbol: GRIN2B
GRIN2B
0.420 GeneticVariation disease BEFREE We identified GRIN2B gain-of-function mutations as a cause of West syndrome with severe developmental delay as well as of ID with childhood onset focal epilepsy. 24272827 2014
Entrez Id: 221692
Gene Symbol: PHACTR1
PHACTR1
0.410 GeneticVariation disease BEFREE (Asn479Ile)] in PHACTR1, encoding a molecule critical for the regulation of protein phosphatase 1 (PP1) and the actin cytoskeleton, in unrelated Japanese individuals with West syndrome (infantile spasms with intellectual disability). 30256902 2018
Entrez Id: 10695
Gene Symbol: CNPY3
CNPY3
0.410 GeneticVariation disease BEFREE We have now identified biallelic CNPY3 variants in three individuals with WS; these include compound-heterozygous missense and frameshift variants in a family with two affected siblings (individuals 1 and 2) and a homozygous splicing variant in a consanguineous family (individual 3). 29394991 2018
Entrez Id: 150094
Gene Symbol: SIK1
SIK1
0.410 GeneticVariation disease BEFREE Individuals with SIK1 mutations had short survival in cases with neonatal epilepsy onset, and an autism plus developmental syndrome after infantile spasms in others. 25839329 2015
Entrez Id: 23236
Gene Symbol: PLCB1
PLCB1
0.410 GeneticVariation disease BEFREE In addition, a cohort of 12 consanguineous families of children with infantile spasms were analysed for linkage to the phospholipase C-β 1 gene locus. 20833646 2010
Entrez Id: 5443
Gene Symbol: POMC
POMC
0.400 GeneticVariation disease BEFREE Infants with untreated West syndrome were randomized to receive 14 days of prednisolone (40 to 60 mg/day) or intramuscular long-acting ACTH (40 to 60 IU every other day). 28927673 2017