Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 55187
Gene Symbol: VPS13D
VPS13D
0.010 Biomarker disease BEFREE In previous studies involving the following heteroleptic Ru complexes, [Ru(pic)(dppb)(bipy)]PF<sub>6</sub> (SCAR1), [Ru(pic)(dppb)(Me-bipy)]PF<sub>6</sub> (SCAR2), [Ru(pic)(dppb)(phen)]PF<sub>6</sub> (SCAR4), <i>cis</i>-[Ru(pic)(dppe)<sub>2</sub>]PF<sub>6</sub> (SCAR5), and [Ru(pic)(dppe)(phen)]PF<sub>6</sub> (SCAR7), we observed excellent anti-TB activity, moderate cell-toxicity, and a lack of oral bioavailability in an <i>in vivo</i> model of these complexes. 30574128 2018
Entrez Id: 79001
Gene Symbol: VKORC1
VKORC1
0.010 Biomarker disease BEFREE Since both P. aeruginosa DsbB1 and M. tuberculosis VKOR complement an E. coli dsbB knockout, we screened simultaneously for inhibitors of each complemented E. coli strain expressing a disulfide-bond sensitive β-galactosidase reported previously. 30556355 2019
Entrez Id: 7431
Gene Symbol: VIM
VIM
0.030 Biomarker disease BEFREE Increased cytokine secretion was subsequently observed with vimentin stimulation of sarcoidosis PBMCs vs. tuberculosis PBMCs (IFN-γ: 396.6 pg/mL vs 0.1 pg/mL, p = 0.0009; TNF-α: 1139 pg/mL vs 0.1 pg/mL, p<0.0001). 28114394 2017
Entrez Id: 7431
Gene Symbol: VIM
VIM
0.030 Biomarker disease LHGDN These results indicate that vimentin is involved in binding of NKp46 to M. tuberculosis H37Ra-infected mononuclear phagocytes. 17056548 2006
Entrez Id: 7431
Gene Symbol: VIM
VIM
0.030 AlteredExpression disease BEFREE Besides, the expression of vimentin in avirulent strain, Mycobacterium tuberculosis H37Ra- infected macrophages was similar to the expression in heat-killed H37Rv- infected macrophages. 26876331 2016
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.030 AlteredExpression disease BEFREE Pleural effusion VEGF levels were significantly higher in the malignant group than in the tuberculosis group (2,091.47 ± 1,624.80 pg/mL vs. 1,291.05 ± 1,100.53 pg/mL, P < 0.05), whereas pleural effusion endocan levels were similar between the two groups (1.22 ± 0.74 ng/mL vs. 0.87 ± 0.53 ng/mL). 28626164 2017
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.030 AlteredExpression disease BEFREE In accordance with our in vitro and in vivo results, we show that the level of VEGF in TB patients is elevated and that endothelial progenitor cells are mobilized from the bone marrow. 27616470 2016
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.030 AlteredExpression disease BEFREE A biosignature comprising unstimulated IFN-γ, MIP-1β, TGF-α and antigen-specific levels of TGF-α and VEGF, identified on a training sample set (n = 311), validated by diagnosing TB disease in the test set (n = 134) with an AUC of 0.81(95% CI, 0.76-0.86), corresponding to a sensitivity of 64.2%(95% CI, 49.7-76.5%) and specificity of 82.7%(95% CI, 72.4-89.9%). 29422548 2018
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE SLC11A1 and VDR gene variants and susceptibility to tuberculosis and disease progression in East India. 22008758 2011
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 Biomarker disease BEFREE Polymorphisms in genes encoding natural-resistance-associated macrophage protein, vitamin D receptor and mannose-binding lectin were associated with tuberculosis. 10677381 2000
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE A quantitative synthesis was performed for the published studies based on the association between the VDR ApaI gene polymorphism and the risk of TB retrieved from PubMed (Medline) and EMBASE web databases. 24571812 2014
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 Biomarker disease BEFREE Polymorphisms in human leukocyte antigen (HLA), MBL2, CD209, vitamin D receptor, cytokine, chemokine and chemokine receptor genes have been shown to be associated with development of TB in HIV patients. 21943869 2012
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Plasma levels of vitamin D and polymorphisms in the vitamin D receptor may affect tuberculosis, and HIV infection associates with vitamin D deficiency. 22280097 2012
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 AlteredExpression disease BEFREE We report here that TLR activation of human macrophages up-regulated expression of the vitamin D receptor and the vitamin D-1-hydroxylase genes, leading to induction of the antimicrobial peptide cathelicidin and killing of intracellular Mycobacterium tuberculosis. 16497887 2006
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disease and decrease culture conversion rates in drug susceptible TB. 28700743 2017
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE VDR polymorphisms were not significantly associated with susceptibility to TB in the case-control study. 15295697 2004
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease LHGDN Vitamin D receptor (VDR) gene variants are associated with differential susceptibility or resistance to tuberculosis in different ethnic groups. 18397302 2008
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 Biomarker disease BEFREE Studies have reported genetic markers to predict TB development in human leukocyte antigen (HLA) and non-HLA genes like killer immunoglobulin-like receptor (KIR), toll-like receptors (TLRs), cytokine/chemokines and their receptors, vitamin D receptor (VDR) and SLC11A1 etc. 30167433 2018
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 Biomarker disease BEFREE Many genes involved in tuberculosis susceptibility (e.g., NRAMP1 (SLC11A1), IFNG, NOS2A, VDR, ISG15, TACO, TLR1, TLR, IL18R1, chemokines, PADI, DUSP14, MBL, and MASP-2) have been subjected to epigenetic modification. 26559095 2015
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE A cohort of pulmonary tuberculosis (TB) patients in a South African admixed population was investigated to determine if the vitamin D receptor gene (VDR) polymorphisms FokI, ApaI, and TaqI are associated with TB susceptibility or time to sputum conversion, and to investigate other clinical and demographic factors affecting the rate of response to treatment. 17449323 2007
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Vitamin D receptor (VDR) gene variants have been shown to be regulating the immune response in tuberculosis. 27067904 2016
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Our meta-analysis suggested that VDR rs1544410, rs2228570 and rs731236 variants might serve as genetic biomarkers of TB in certain populations. 30822458 2019
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE This study results suggest that BsmI variant of VDR gene may play an important role in susceptibility to tuberculosis. 21104028 2011
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease LHGDN Vitamin D receptor polymorphisms and susceptibility to tuberculosis in West Africa: a case-control and family study. 15478069 2004
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 AlteredExpression disease BEFREE When Monocytes Derived Macrophages (MDM) from DM2 patients with low VDR expression were supplemented with vitamin D, MDMs eliminate efficiently M. tuberculosis. 25016144 2014