Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 414325
Gene Symbol: DEFB103A
DEFB103A
0.010 Biomarker disease BEFREE MC1R antagonists human beta-defensin 3 and agouti signaling protein blocked MSH- but not forskolin-mediated enhancement of platinum-induced DNA damage. cAMP-enhanced repair of cisplatin-induced DNA damage was dependent on PKA-mediated phosphorylation of ATR on S435 which promoted ATR's interaction with the key NER factor xeroderma pigmentosum A (XPA) and facilitated recruitment of an XPA-ATR-pS435 complex to sites of cisplatin DNA damage. 28916831 2017
Entrez Id: 55894
Gene Symbol: DEFB103B
DEFB103B
0.010 Biomarker disease BEFREE MC1R antagonists human beta-defensin 3 and agouti signaling protein blocked MSH- but not forskolin-mediated enhancement of platinum-induced DNA damage. cAMP-enhanced repair of cisplatin-induced DNA damage was dependent on PKA-mediated phosphorylation of ATR on S435 which promoted ATR's interaction with the key NER factor xeroderma pigmentosum A (XPA) and facilitated recruitment of an XPA-ATR-pS435 complex to sites of cisplatin DNA damage. 28916831 2017
Entrez Id: 115482722
Gene Symbol: H3P33
H3P33
0.010 GeneticVariation disease BEFREE This provides first insights why so far no mutations in the p34 or p44 TFIIH-core subunits have been identified that would lead to the hallmark nucleotide excision repair syndromes xeroderma pigmentosum or trichothiodystrophy. 28977422 2017
Entrez Id: 55379
Gene Symbol: LRRC59
LRRC59
0.010 GeneticVariation disease BEFREE This provides first insights why so far no mutations in the p34 or p44 TFIIH-core subunits have been identified that would lead to the hallmark nucleotide excision repair syndromes xeroderma pigmentosum or trichothiodystrophy. 28977422 2017
Entrez Id: 5887
Gene Symbol: RAD23B
RAD23B
0.010 AlteredExpression disease BEFREE Sequestration was accompanied by an accumulation of ubiquitinated proteins and decreased xeroderma pigmentosum C (XPC) levels in mice, indicative of HR23A and HR23B dysfunction. 26998601 2016
Entrez Id: 7874
Gene Symbol: USP7
USP7
0.010 AlteredExpression disease BEFREE Furthermore, ectopic expression of USP7 promoted the UV-induced proliferating cell nuclear antigen (PCNA) monoubiquitination in Polη-proficient but not in Polη-deficient XPV (Xeroderma pigmentosum variant) cells, suggesting that USP7 facilitates UV-induced PCNA monoubiquitination by stabilizing Polη. 25435364 2015
Entrez Id: 84464
Gene Symbol: SLX4
SLX4
0.010 GeneticVariation disease BEFREE Because several atypical xeroderma pigmentosum (XP) phenotype-causing XPF missense mutations are located in the SLX4-interacting region, we suspected the disruption of the interaction with SLX4 in these XPF mutants, thereby causing severer phenotypes. 26453996 2015
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.010 GeneticVariation disease BEFREE In contrast to melanomas in the general population, the frequency of BRAF mutations (11%, 7/61), NRAS mutations (21%, 13/62), and KIT mutations (21%, 6/28) in XP melanomas was lower than for PTEN. 24483290 2014
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.010 GeneticVariation disease BEFREE In contrast to melanomas in the general population, the frequency of BRAF mutations (11%, 7/61), NRAS mutations (21%, 13/62), and KIT mutations (21%, 6/28) in XP melanomas was lower than for PTEN. 24483290 2014
Entrez Id: 51750
Gene Symbol: RTEL1
RTEL1
0.010 Biomarker disease BEFREE FANCJ belongs to a conserved iron-sulfur (Fe S) cluster family of helicases important for genomic stability including XPD (nucleotide excision repair), DDX11 (sister chromatid cohesion), and RTEL (telomere metabolism), genetically linked to xeroderma pigmentosum/Cockayne syndrome, Warsaw breakage syndrome, and dyskeratosis congenita, respectively. 23935105 2013
Entrez Id: 1663
Gene Symbol: DDX11
DDX11
0.010 GeneticVariation disease BEFREE FANCJ belongs to a conserved iron-sulfur (Fe S) cluster family of helicases important for genomic stability including XPD (nucleotide excision repair), DDX11 (sister chromatid cohesion), and RTEL (telomere metabolism), genetically linked to xeroderma pigmentosum/Cockayne syndrome, Warsaw breakage syndrome, and dyskeratosis congenita, respectively. 23935105 2013
Entrez Id: 5724
Gene Symbol: PTAFR
PTAFR
0.010 Biomarker disease BEFREE Platelet-activating factor receptor agonists mediate xeroderma pigmentosum A photosensitivity. 22303003 2012
Entrez Id: 3082
Gene Symbol: HGF
HGF
0.010 GeneticVariation disease BEFREE RNA was extracted from histologically confirmed tumor isolates, and using real-time polymerase chain reaction (PCR) studies, we assessed the quantitative expression of 12 genes with potential importance in chemotherapy resistance and tumor progression, including thymidylate synthase (TS; 5-fluorouracil), excision repair cross complementing gene-1, and xeroderma pigmentosum groups A through G (oxaliplatin), topoisomerase-I (irinotecan), c-met, and hepatocyte growth factor. 21982065 2012
Entrez Id: 7298
Gene Symbol: TYMS
TYMS
0.010 GeneticVariation disease BEFREE RNA was extracted from histologically confirmed tumor isolates, and using real-time polymerase chain reaction (PCR) studies, we assessed the quantitative expression of 12 genes with potential importance in chemotherapy resistance and tumor progression, including thymidylate synthase (TS; 5-fluorouracil), excision repair cross complementing gene-1, and xeroderma pigmentosum groups A through G (oxaliplatin), topoisomerase-I (irinotecan), c-met, and hepatocyte growth factor. 21982065 2012
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.010 Biomarker disease BEFREE PTEN loss also suppressed expression of the key GG-NER protein xeroderma pigmentosum C (XPC) through the AKT/p38 signaling axis. 21771908 2011
Entrez Id: 5591
Gene Symbol: PRKDC
PRKDC
0.010 GeneticVariation disease BEFREE We provide evidence of a novel splice variant of the DNA-PKcs gene associated with radiosensitivity in a patient with xeroderma pigmentosum and report the first double mutant in distinct DNA repair pathways being consistent with viability. 19797196 2010
Entrez Id: 355
Gene Symbol: FAS
FAS
0.010 Biomarker disease BEFREE Immunohistochemistry was performed on tissue sections derived from skin biopsies of basal cell carcinomas (BCCs) of xeroderma pigmentosum (XP) patients, non-XP patients and nevoid basal cell carcinoma syndrome (NBCCS) patients, using antibodies against B-cell lymphoma/leukemia-2 (Bcl-2), Bcl-2 associated X protein (Bax), CD95, CD3, CD8 and CD56. 19719835 2010
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.010 Biomarker disease BEFREE By using fibroblasts from a patient with xeroderma pigmentosum A (XP-A) and those transfected with human XPA gene, we found that UVB activates Stat3 via both ROS and DNA damage, while UVC does so mainly via DNA damage. 20456494 2010
Entrez Id: 4684
Gene Symbol: NCAM1
NCAM1
0.010 Biomarker disease BEFREE Immunohistochemistry was performed on tissue sections derived from skin biopsies of basal cell carcinomas (BCCs) of xeroderma pigmentosum (XP) patients, non-XP patients and nevoid basal cell carcinoma syndrome (NBCCS) patients, using antibodies against B-cell lymphoma/leukemia-2 (Bcl-2), Bcl-2 associated X protein (Bax), CD95, CD3, CD8 and CD56. 19719835 2010
Entrez Id: 581
Gene Symbol: BAX
BAX
0.010 Biomarker disease BEFREE Immunohistochemistry was performed on tissue sections derived from skin biopsies of basal cell carcinomas (BCCs) of xeroderma pigmentosum (XP) patients, non-XP patients and nevoid basal cell carcinoma syndrome (NBCCS) patients, using antibodies against B-cell lymphoma/leukemia-2 (Bcl-2), Bcl-2 associated X protein (Bax), CD95, CD3, CD8 and CD56. 19719835 2010
Entrez Id: 328
Gene Symbol: APEX1
APEX1
0.010 GeneticVariation disease BEFREE We focused on X-ray repair cross-complementing group 1 (XRCC1), Xeroderma pigmentosum D (XPD) and apurinic/apyrimidinic endonuclease (APE1) as these are most extensively studied in cancer. 18946634 2009
Entrez Id: 1022
Gene Symbol: CDK7
CDK7
0.010 Biomarker disease BEFREE In cells of XP-G patients with a combined XP and CS phenotype, XPG fails to associate with TFIIH and as a consequence the CAK subunit dissociates from core TFIIH. 18077223 2008
Entrez Id: 780
Gene Symbol: DDR1
DDR1
0.010 Biomarker disease BEFREE In cells of XP-G patients with a combined XP and CS phenotype, XPG fails to associate with TFIIH and as a consequence the CAK subunit dissociates from core TFIIH. 18077223 2008
Entrez Id: 467
Gene Symbol: ATF3
ATF3
0.010 Biomarker disease BEFREE Here, we show that low doses of UV trigger delayed activation of the stress-induced MAPkinase JNK and its proapoptotic targets c-Jun and ATF-3 in TCR-deficient primary human fibroblasts from Xeroderma Pigmentosum (XP) and Cockayne syndrome (CS) patients. 16044158 2005
Entrez Id: 5599
Gene Symbol: MAPK8
MAPK8
0.010 Biomarker disease BEFREE Here, we show that low doses of UV trigger delayed activation of the stress-induced MAPkinase JNK and its proapoptotic targets c-Jun and ATF-3 in TCR-deficient primary human fibroblasts from Xeroderma Pigmentosum (XP) and Cockayne syndrome (CS) patients. 16044158 2005