Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 55726
Gene Symbol: INTS13
INTS13
0.010 Biomarker disease BEFREE Histologies were; Gastrointestinal stromal tumors (7), desmoid (4), spindle cell tumor (2), dedifferentiated liposarcoma (2), and nonseminomatous germ cell tumor (1). 31846095 2020
Entrez Id: 6778
Gene Symbol: STAT6
STAT6
0.010 Biomarker disease BEFREE The remaining 15 tumors were reclassified based on morphology, additional immunohistochemistry and fluorescence in situ hybridization as desmoid-type fibromatosis (3 tumors), nerve sheath/neural tumors (3 tumors), low-grade fibromyxoid sarcoma, medallion-like dermal fibroma, poorly differentiated Sertoli cell tumor, nodular/proliferative fasciitis, calcifying fibrous tumor, aneurysmal bone cyst of soft tissue, STAT6-negative SFT with adipocytic differentiation, undifferentiated small round blue cell tumor, and scar (1 tumor each). 29228868 2019
Entrez Id: 7030
Gene Symbol: TFE3
TFE3
0.010 Biomarker disease BEFREE Nuclear TFE3 and β-catenin staining was performed on a wide range of tumor types such as DTF (n = 46), nodular fasciitis (n = 14), neurofibroma (n = 5), dermatofibrosarcoma protuberans (n = 5), gastrointestinal stromal tumor (n = 10), sclerosing epithelioid fibrosarcoma (n = 2), synovial sarcoma (n = 5), leiomyoma (n = 3) and cutaneous scar tissue (n = 4) using an immunohistochemical approach. 31043173 2019
Entrez Id: 2100
Gene Symbol: ESR2
ESR2
0.010 AlteredExpression disease BEFREE Estrogen receptor beta expression correlates with proliferation in desmoid tumors. 30742303 2019
Entrez Id: 6646
Gene Symbol: SOAT1
SOAT1
0.010 Biomarker disease BEFREE Only few studies address other signaling pathways which can drive uncontrolled growth in DTF such as: JAK/STAT, Notch, PI3 kinase/AKT, mTOR, Hedgehog, and the estrogen growth regulatory pathways. 31165043 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.010 Biomarker disease BEFREE Desmoid tumors display a strong immune infiltration at the tumor margins and no PD-L1-driven immune suppression. 31511925 2019
Entrez Id: 51176
Gene Symbol: LEF1
LEF1
0.010 Biomarker disease BEFREE Eighteen of the 25 DTF were positive for LEF1 while 12 of 25 were positive for β-catenin (1 excluded due to loss of tissue). 28027119 2018
Entrez Id: 1490
Gene Symbol: CCN2
CCN2
0.010 Biomarker disease BEFREE All 15 cases of desmoid tumors were positive for TGF-β and CTGF. 26894649 2017
Entrez Id: 7038
Gene Symbol: TG
TG
0.010 AlteredExpression disease BEFREE No significant differences were noted in terms of age, gender, and serum thyroglobulin levels between extensive and focal DTF cases. 28794344 2017
Entrez Id: 406991
Gene Symbol: MIR21
MIR21
0.010 AlteredExpression disease BEFREE The correlation between sporadic DTs and miRNA expression showed that miR-21-3p increased in mutated versus wild-type DTs, while miR-197-3p was decreased. 28418912 2017
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.010 GeneticVariation disease BEFREE In addition to the CTNNB1 mutation (64%), pediatric AF showed AKT1 (31%), BRAF (19%), and TP53 (9%) mutations, whereas only the CTNNB1 mutation was found in adult AF. 27062580 2016
Entrez Id: 5979
Gene Symbol: RET
RET
0.010 GeneticVariation disease BEFREE CTNNB1, APC, AKT1, BRAF TP53, and RET Sanger sequencing and next-generation sequencing (NGS) with the 50-gene Ion AmpliSeq Cancer Hotspot Panel v2 were performed on formalin-fixed samples from 28 pediatric and 33 adult AFs. 27062580 2016
Entrez Id: 3791
Gene Symbol: KDR
KDR
0.010 GeneticVariation disease BEFREE The polymorphism Q472H VEGFR was identified in both pediatric (56%) and adult (40%) AF. 27062580 2016
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.010 GeneticVariation disease BEFREE In addition to the CTNNB1 mutation (64%), pediatric AF showed AKT1 (31%), BRAF (19%), and TP53 (9%) mutations, whereas only the CTNNB1 mutation was found in adult AF. 27062580 2016
Entrez Id: 9242
Gene Symbol: MSC
MSC
0.010 Biomarker disease BEFREE In agreement with these results, S100a4 appears to be co-expressed together with mesenchymal stem cell (MSC) markers in desmoid tumours from Apc<sup>1638N/+</sup> mice, as well as from sporadic and hereditary human desmoids. 27750112 2016
Entrez Id: 6275
Gene Symbol: S100A4
S100A4
0.010 Biomarker disease BEFREE Our data provide the first report on the in vivo role of S100a4 in intestinal tumourigenesis and describe a new role for S100a4 in the aetiology of desmoids formation. 27750112 2016
Entrez Id: 1435
Gene Symbol: CSF1
CSF1
0.010 Biomarker disease BEFREE Recently, two distinct stromal signatures derived from a macrophage response (colony-stimulating factor 1, CSF1) and a fibroblastic response (desmoid-type fibromatosis, DTF) were identified in breast carcinomas and correlated with clinicopathologic features including outcome. 24263966 2014
Entrez Id: 29119
Gene Symbol: CTNNA3
CTNNA3
0.010 GeneticVariation disease BEFREE A role for the serine to phenylalanine substitution at codon 45 (the S45F mutation) in the catenin (cadherin-associated protein) β-1 (CTNNB1) gene as a molecular predictor of local recurrence in patients with primary, sporadic desmoid tumor (DT) has been reported. 23913621 2013
Entrez Id: 1495
Gene Symbol: CTNNA1
CTNNA1
0.010 GeneticVariation disease BEFREE A role for the serine to phenylalanine substitution at codon 45 (the S45F mutation) in the catenin (cadherin-associated protein) β-1 (CTNNB1) gene as a molecular predictor of local recurrence in patients with primary, sporadic desmoid tumor (DT) has been reported. 23913621 2013
Entrez Id: 10631
Gene Symbol: POSTN
POSTN
0.010 Biomarker disease BEFREE Desmoids had an abundance of collagen II and periostin only. 23063503 2013
Entrez Id: 4920
Gene Symbol: ROR2
ROR2
0.010 AlteredExpression disease BEFREE An initial screen of gene expression data for 48 RTKs in 148 sarcomas showed that ROR2 was expressed in a subset of leiomyosarcoma (LMS), gastrointestinal stromal tumour (GIST) and desmoid-type fibromatosis (DTF). 22294416 2012
Entrez Id: 4192
Gene Symbol: MDK
MDK
0.010 AlteredExpression disease BEFREE Interestingly, enhanced midkine expression significantly correlated with a higher propensity and decreased time for primary DT recurrence (log-rank p = 0.0025). 21826666 2011
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.010 Biomarker disease BEFREE Immunohistochemistry for BCL-6 was performed on 64 mesenchymal tumors [26 SFT (19 benign/uncertain, 7 malignant), 6 synovial sarcomas (SS), 5 gastrointestinal stromal tumors (GIST), 5 malignant peripheral nerve sheath tumors (MPNST), 5 leiomyosarcomas (LMS), 9 leiomyomas (LM) 4 desmoid tumors (DT), 4 perineuriomas (PN)]. 21725042 2011
Entrez Id: 5175
Gene Symbol: PECAM1
PECAM1
0.010 AlteredExpression disease BEFREE The correlation between β-catenin aberrant expression and VEGF overexpression was examined and microvessel density (MVD) assessed by immunohistochemical expression of CD31 in 74 samples (63 primary and 11 recurrent samples, 63 patients) of sporadic desmoid tumours without familial adenomatous polyposis (FAP). 22034877 2011
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.010 AlteredExpression disease BEFREE There was a statistically significant correlation between widespread nuclear expression of β-catenin and overexpression of VEGF in all desmoid tumours (P = 0.04, Fisher's exact test). 22034877 2011