Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 Biomarker disease BEFREE Sonic Hedgehog (SHH) and GLI2, an obligatory mediator of SHH signal transduction, are holoprosencephaly (HPE)-associated genes essential in pituitary formation. 25056824 2015
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE These functions are very likely conserved among bilaterians since vertebrate six3 is required for neuroendocrine and median brain development with certain mutations leading to holoprosencephaly. 22216011 2011
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Holoprosencephaly (HPE) is genetically heterogeneous with four genes, SIX3, SHH, TGIF, and ZIC2 that have been identified to date and that are altered in 12% of patients. 11479728 2001
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE Mutations in the four main genes involved in HPE (SHH, ZIC2, SIX3, TGIF) were identified in 25% of cases. 21940735 2011
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Mutations in GLI2 have been found in association with holoprosencephaly (HPE) and HPE-like phenotype, with and without pituitary hormone deficiencies; as well as in patients with pituitary dysfunction with and without HPE craniofacial features. 23304807 2012
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Holoprosencephaly and sacral dysgenesis are found in association with this deletion, due to haploinsufficiency of SHH and HLBX9 genes respectively. 27614115 2016
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE This usually includes analysis of chromosomes by high-resolution karyotyping, clinical assessment to rule-out well recognized syndromes that are associated with HPE (e.g., Pallister-Hall syndrome, Smith-Lemli-Opitz syndrome and others), and molecular studies of the most common HPE associated genes (e.g., SHH, ZIC2 and SIX3). 20104604 2010
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Utilizing prospective sequence analysis of SHH, ZIC2, SIX3 and TGIF in holoprosencephaly probands to describe the parameters limiting the observed frequency of mutant gene×gene interactions. 22310223 2012
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Numerous genetic loci and environmental factors are implicated in HPE, but mutation in the sonic hedgehog (Shh) gene is an established cause in both humans and mice. 17525797 2007
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Our data indicate that in a subset of patients SCH may develop as one aspect of a more complex malformation of the ventral forebrain, directly result from mutations in the SHH pathway and hence be considered as yet another feature of the broad phenotypic spectrum of holoprosencephaly. 20157829 2010
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE However, the family presented here is unique as none of the three identified individuals with a GLI2 deletion showed any typical signs of holoprosencephaly, whereas all patients reported so far were referred for genetic testing because at least one member exhibited holoprosencephaly and related features. 25820550 2015
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE We hypothesize that mutations of a gene in 7q36, designated HPE3, are responsible for both sporadic HPE and a majority of families with autosomal dominant HPE. 8058764 1994
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Our findings suggest that patients with SHH mutations and a HPE-like phenotype have normal cognitive ratios and significant language impairment. 16752381 2006
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE These data suggest a direct link between Six3 and Shh regulation during normal forebrain development and in the pathogenesis of HPE. 18836447 2008
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 Biomarker disease BEFREE We report 22 patients with normal neuropsychological development and a holoprosencephaly-like (HPE-like) phenotype screened for SHH, SIX3, TGIF, and GLI2. 17001669 2006
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Genetic testing included chromosomal microarray, Sanger sequencing for SHH, ZIC2, SIX3, and TGIF, and whole-exome sequencing (WES) of 10 trios.ResultsSemilobar HPE was the most common subtype of HPE, seen in 50% of the participants. 28640243 2018
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE To identify whether any mutations of candidate genes including SHH, ZIC2, SIX3, and TGIF exist in a Taiwanese family segregated with holoprosencephaly (HPE) and moyamoya disease. 16475235 2006
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE These YACs narrow the HPE2 critical region to less than 1 Mb and are now being further analyzed to identify the gene causing holoprosencephaly on chromosome 2. 8824878 1996
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 Biomarker disease BEFREE Genomic GLI2 aberrations that mainly result in truncated proteins have been reported to cause holoprosencephaly or holoprosencephaly-like features, sometimes associated with hypopituitarism. 23408573 2013
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE These clinical, biochemical, and molecular studies suggest that HPE and other malformations in SLOS may be caused by incomplete or abnormal modification of the sonic hedgehog protein and, possible, other patterning proteins of the hedgehog class, a hypothesis testable in somatic cell systems. 8989473 1996
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE Heterozygous nonsense and missense mutations of the human TGIF gene have been associated with holoprosencephaly, the most common congenital malformation of the forebrain. 15831469 2005
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE Molecular diagnosis of a novel heterozygous 268C-->T (R90C) mutation in TGIF gene in a fetus with holoprosencephaly and premaxillary agenesis. 11810641 2002
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE A novel SIX3 mutation segregates with holoprosencephaly in a large family. 19353631 2009
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE Different genes are implicated in the pathogenesis of HPE; these include SHH, ZIC2, SIX3, TGIF, and human DKK1. 12567406 2003
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE We present the description of a family simultaneously segregating two novel variants in the HPE-associated genes, ZIC2 and GLI2, as well as the results of extensive population-based studies of the variant region in GLI2. 21416594 2011