Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Heterozygous GLI2 loss of function mutations in humans have been reported in holoprosencephaly (HPE), HPE-like phenotypes associated with pituitary anomalies and combined pituitary hormone deficiency with or without other extra-pituitary findings. 30548673 2019
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Our study provides structural insights of the probable pathogenesis mechanism of two TGIF1-related HPE cases, and evidences for the roles of P192 and R219 in HD folding. 29355528 2018
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Genetic testing included chromosomal microarray, Sanger sequencing for SHH, ZIC2, SIX3, and TGIF, and whole-exome sequencing (WES) of 10 trios.ResultsSemilobar HPE was the most common subtype of HPE, seen in 50% of the participants. 28640243 2018
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE Zic2-binding to the cis-regulatory element near the Tgif1 promoter may be involved in the mechanism underlying forebrain development and incidences of HPE. 29391420 2018
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Although, some developmental processes that are regulated by TGIFs may be Nodal-dependent, it appears that the forebrain patterning defects and HPE in Tgif mutant mouse embryos is primarily due to altered signaling via the Shh pathway. 29749689 2018
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Three of the remaining families had (likely) pathogenic variants in the JBTS gene C5orf42, and one patient had a novel de novo frameshift variant in SHH known to cause autosomal dominant holoprosencephaly. 29321670 2018
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE Two families showed inherited deletions that contain SIX3 and were incompletely penetrant for HPE. 28670735 2018
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE TGIF1 is a transcriptional repressor that limits the output of the Transforming Growth Factor ß (TGFß)/Nodal signaling pathway, and HPE in patients with TGIF1 variants has been suggested to be due to increased Nodal signaling. 27924807 2017
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE In humans, SIX3 haploinsufficiency results in holoprosencephaly, a defect in anterior midline formation. 28093895 2017
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Our findings show that variations in Six3 dosage result in different forms of HPE. 27770010 2016
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Holoprosencephaly and sacral dysgenesis are found in association with this deletion, due to haploinsufficiency of SHH and HLBX9 genes respectively. 27614115 2016
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 Biomarker disease CTD_human Although normally indistinguishable from wild-type littermates, we demonstrate that mice with single-allele Gli2 mutations exhibit increased penetrance and severity of HPE in response to low-dose teratogen exposure. 27585885 2016
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease CTD_human Gli2 gene-environment interactions contribute to the etiological complexity of holoprosencephaly: evidence from a mouse model. 27585885 2016
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 Biomarker disease BEFREE Sonic Hedgehog (SHH) and GLI2, an obligatory mediator of SHH signal transduction, are holoprosencephaly (HPE)-associated genes essential in pituitary formation. 25056824 2015
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE However, the family presented here is unique as none of the three identified individuals with a GLI2 deletion showed any typical signs of holoprosencephaly, whereas all patients reported so far were referred for genetic testing because at least one member exhibited holoprosencephaly and related features. 25820550 2015
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Although mutations in the sonic hedgehog gene SHH and more than 10 other genes are known to cause holoprosencephaly, many patients remain without a molecular diagnosis. 25218063 2015
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE Mutations and deletions involving the TGIF1 gene have been described in patients with HPE in an autosomal dominant model of inheritance. 26278570 2015
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Pituitary insufficiency other than isolated diabetes insipidus is a rare finding of HPE, and occurs most frequently in patients with GLI2 mutations (the phenotype of which typically does not include frank neuroanatomic anomalies such as HPE); ours is the only described patient with a ZIC2 mutation and both anterior and posterior pituitary dysfunction. 24706429 2014
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Pathogenic mutations in GLI2 cause a specific phenotype that is distinct from holoprosencephaly. 24744436 2014
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease CTD_human The inhibitors of the NODAL and SHH pathways, even at low concentration, acted synergistically to promote an HPE-like phenotype. 23264560 2013
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 Biomarker disease BEFREE Genomic GLI2 aberrations that mainly result in truncated proteins have been reported to cause holoprosencephaly or holoprosencephaly-like features, sometimes associated with hypopituitarism. 23408573 2013
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Heterozygous nonsense GLI2 mutations have been reported in patients with isolated or combined pituitary hormone deficiency (CPHD), with or without holoprosencephaly. 22967285 2013
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE Sequencing of the CDON, SHH, ZIC2, SIX3, and TGIF genes (associated with holoprosencephaly) did not disclose pathogenic alterations. 21995818 2012
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Mutations in the Sonic Hedgehog (SHH) gene result in HPE in humans and mice, and the Shh pathway is targeted by other mutations that cause HPE. 22383895 2012
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Tgif1 and Tgif2 are transcriptional repressors that limit Transforming Growth Factor β/Nodal signaling, and we show that reducing Nodal signaling in embryos lacking both Tgifs reduces the severity of HPE and partially restores the output of Shh signaling. 22383895 2012