Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.350 GeneticVariation disease BEFREE In mice, homozygosity for mutations in the Vangl1 and Vangl2 genes or combined heterozygosity for Vangl1/Vangl2 mutations causes the very severe neural tube defect (NTD) craniorachischisis. 25068569 2014
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.350 GeneticVariation disease BEFREE Protein tyrosine kinase 7 (Ptk7) was shown to cause a very severe form of NTDs called craniorachischisis in a mouse model and genetically interacts with a core PCP member Vangl2 where double heterozygotes suffer from spina bifida. 26368655 2015
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.350 GeneticVariation disease BEFREE The Loop-tail (Lp) mouse that develops craniorachischisis carry missense mutations in the PCP core gene Vangl2, that is the mammalian homolog of the Drosophila Strabismus/Van gogh (Stbm/Vang). 21674647 2012
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.350 GeneticVariation disease BEFREE Mouse models indicate that the homozygous disruption of Sec24b, which mediates the ER-to-Golgi transportation of the core PCP gene Vangl2 as a component of the COPII vesicle, will result in craniorachischisis. 23592378 2013
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.310 GeneticVariation disease BEFREE In mice, homozygosity for mutations in the Vangl1 and Vangl2 genes or combined heterozygosity for Vangl1/Vangl2 mutations causes the very severe neural tube defect (NTD) craniorachischisis. 25068569 2014
Entrez Id: 5547
Gene Symbol: PRCP
PRCP
0.020 GeneticVariation disease BEFREE Homozygous disruption of PCP genes in mice results in a spectrum of NTDs, including defects that affect the entire neural axis (craniorachischisis), cranial NTDs (exencephaly) and spina bifida. 21840926 2011
Entrez Id: 23513
Gene Symbol: SCRIB
SCRIB
0.020 GeneticVariation disease BEFREE In addition, we demonstrated that the craniorachischisis mouse line-90 mutation I285K, also affected SCRIB subcellular localization. 23922697 2013
Entrez Id: 54858
Gene Symbol: PGPEP1
PGPEP1
0.020 GeneticVariation disease BEFREE Homozygous disruption of PCP genes in mice results in a spectrum of NTDs, including defects that affect the entire neural axis (craniorachischisis), cranial NTDs (exencephaly) and spina bifida. 21840926 2011
Entrez Id: 9620
Gene Symbol: CELSR1
CELSR1
0.020 GeneticVariation disease BEFREE Rare putative mutations in the PCP genes VANGL2, SCRIB, DACT1, and CELSR1 cumulatively contributed to over 20% of cases with craniorachischisis, a rare defect; no contributing variants were found for PRICKLE1 or PTK7. 23024041 2012
Entrez Id: 9620
Gene Symbol: CELSR1
CELSR1
0.020 GeneticVariation disease BEFREE We conclude that missense variants in CELSR1 and SCRIB may represent a cause of CRN in humans, as in mice, with defective PCP protein trafficking to the plasma membrane a likely pathogenic mechanism. 22095531 2012
Entrez Id: 23513
Gene Symbol: SCRIB
SCRIB
0.020 GeneticVariation disease BEFREE We conclude that missense variants in CELSR1 and SCRIB may represent a cause of CRN in humans, as in mice, with defective PCP protein trafficking to the plasma membrane a likely pathogenic mechanism. 22095531 2012
Entrez Id: 649
Gene Symbol: BMP1
BMP1
0.020 GeneticVariation disease BEFREE Homozygous disruption of PCP genes in mice results in a spectrum of NTDs, including defects that affect the entire neural axis (craniorachischisis), cranial NTDs (exencephaly) and spina bifida. 21840926 2011
Entrez Id: 1856
Gene Symbol: DVL2
DVL2
0.010 GeneticVariation disease BEFREE In mouse, all Dvl1(-/-) ; Dvl2(-/-) double mutants display craniorachischisis, a severe form of open NTDs. 23836490 2013
Entrez Id: 1855
Gene Symbol: DVL1
DVL1
0.010 GeneticVariation disease BEFREE In mouse, all Dvl1(-/-) ; Dvl2(-/-) double mutants display craniorachischisis, a severe form of open NTDs. 23836490 2013
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.350 Biomarker disease CTD_human Cranial effects of retinoic acid in the loop-tail (Lp) mutant mouse. 2373757 1990
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.350 Biomarker disease BEFREE This could be mediated via heparan sulfate residues, as Vangl2(Lp/+) embryos fail to initiate neural tube closure and develop craniorachischisis (usually seen only in Vangl2(Lp/Lp)) when cultured in the presence of chlorate, a sulfation inhibitor. 23760952 2013
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.310 Biomarker disease CTD_human Mutations in VANGL1 associated with neural-tube defects. 17409324 2007
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.310 Biomarker disease CTD_human Novel mutations in VANGL1 in neural tube defects. 19319979 2009
Entrez Id: 4522
Gene Symbol: MTHFD1
MTHFD1
0.300 Biomarker disease CTD_human Confirmation of the R653Q polymorphism of the trifunctional C1-synthase enzyme as a maternal risk for neural tube defects in the Irish population. 16552426 2006
Entrez Id: 4886
Gene Symbol: NPY1R
NPY1R
0.300 Biomarker disease CTD_human Gastrointestinal hormones (anorexigenic peptide YY and orexigenic ghrelin) influence neural tube development. 17400914 2007
Entrez Id: 2350
Gene Symbol: FOLR2
FOLR2
0.300 Biomarker disease CTD_human Arsenic-induced congenital malformations in genetically susceptible folate binding protein-2 knockout mice. 11749123 2001
Entrez Id: 85416
Gene Symbol: ZIC5
ZIC5
0.300 Biomarker disease CTD_human Mouse Zic5 deficiency results in neural tube defects and hypoplasia of cephalic neural crest derivatives. 15136147 2004
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.300 Biomarker disease CTD_human Histological comparison of the effects of the splotch gene and retinoic acid on the closure of the mouse neural tube. 3293260 1988
Entrez Id: 6347
Gene Symbol: CCL2
CCL2
0.300 Biomarker disease CTD_human
Entrez Id: 1544
Gene Symbol: CYP1A2
CYP1A2
0.300 Biomarker disease CTD_human Caffeine, selected metabolic gene variants, and risk for neural tube defects. 20641098 2010