Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE This finding underscores the need for evaluating additional variations in IRF6 across multiple populations to better determine its role in nonsyndromic cleft lip and palate. 21039277 2010
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE MSX1 gene polymorphisms in Mexican patients with non-syndromic cleft lip/palate. 27729116 2016
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE DNA variation in Interferon Regulatory Factor 6 (IRF6) causes Van der Woude syndrome (VWS), the most common syndromic form of cleft lip and palate (CLP). 24442519 2014
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE We identified the gene that encodes interferon regulatory factor 6 (IRF6) as a candidate gene on the basis of its involvement in an autosomal dominant form of cleft lip and palate, Van der Woude's syndrome. 15317890 2004
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE Human genetic studies showed that mutations in IRF6 lead to cleft lip and palate and mandibular abnormalities. 28769044 2017
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE In a Vietnamese population, MSX1 variants contribute to cleft lip and palate. 15354328 2005
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE The present work steps toward resolving these issues for at least one MSX1 allele: R151S, previously identified in a single Japanese proband with unilateral cleft lip and palate. 21448236 2011
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE In addition, DNA variation in IRF6 confers significant risk for non-syndromic cleft lip and palate. 28481036 2017
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE These data provide the first mechanistic insight into the heightened caries susceptibility associated with CLP and indicate a direct role for the major CLP gene Irf6 in salivary gland development and a significant role in regulating oral immunity. 27927890 2017
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE Contribution of MSX1 variants to the risk of non-syndromic cleft lip and palate in a Malay population. 21866112 2011
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE Mutations in interferon regulatory factor 6 (IRF6) account for ∼70% of cases of Van der Woude syndrome (VWS), the most common syndromic form of cleft lip and palate. 24360809 2014
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE Among these, variants in interferon regulatory factor 6 (IRF6) cause syndromic orofacial clefting and contribute risk toward isolated cleft lip and palate (1/700 live births). 26332872 2016
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE Novel rare variations in IRF6 in subjects with non-syndromic cleft lip and palate and dental agenesis. 30195270 2019
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE Significantly, we also report the identification of 2 unique missense mutations in the NME proteins in patients with CLP (NME1 R18Q in an IRF6 and GRHL3 mutation-negative patient with van der Woude syndrome and NME2 G71V in a patient with nonsyndromic CLP). 28767310 2017
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE Variation in IRF6 contributes to nonsyndromic cleft lip and palate. 16096995 2005
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE There was a positive association between subjects with cleft lip or cleft lip and palate who had hypodontia outside the cleft region (compared with noncleft controls) and both muscle segment homeo box homolog 1 (MSX1) (p =.029) and transforming growth factor beta 3 (TGFB3) (p =.024). 12733956 2003
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE After correcting for multiple testing, we observed significant associations between fetal single-nucleotide polymorphisms (SNPs) at IRF6, PAX7, 8q21.3, 8q24, KIAA1598-VAX1, and MAFB and isolated cleft lip only (CLO) and cleft lip and palate (CLP). 28662356 2017
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE Association between MSX1 rs12532 polymorphism with nonsyndromic unilateral complete cleft lip and palate and tooth agenesis. 31568994 2020
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE A novel p63 sterile alpha motif (SAM) domain mutation in a Japanese patient with ankyloblepharon, ectodermal defects and cleft lip and palate (AEC) syndrome without ankyloblepharon. 12932250 2003
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE The p63 protein is crucial for epidermal development, and its mutations cause the extrodactyly ectodermal dysplasia and cleft lip/palate syndrome. 16679535 2006
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE We show that enhancers established by p63 are highly enriched for single-nucleotide polymorphisms associated with nonsyndromic cleft lip ± cleft palate (CL/P). 31049400 2019
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE Mutations in the p63 DNA-binding domain are associated with ectrodactyly, ectodermal dysplasia, and cleft lip/palate (EEC) syndrome. 30566872 2018
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE We have established primary adult skin keratinocytes from ectrodactyly, ectodermal dysplasia, and cleft lip/palate (EEC) syndrome patients with p63 mutations as an in vitro human model to study the disease mechanism in the skin of EEC patients. 23355676 2013
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE We established an epidermal commitment model using human induced pluripotent stem cells (iPSCs) and characterized differentiation defects of iPSCs derived from ectrodactyly, ectodermal dysplasia, and cleft lip/palate (EEC) syndrome patients carrying p63 mutations. 31413199 2019
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE Features between RHS and EEC syndrome (ectrodactyly, ectodermal dysplasia and cleft lip/palate) have led to the recent identification of mutations in the TP63 gene, located on 3q27, in this condition. 17609671 2007