Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.340 GeneticVariation disease BEFREE Nineteen (76%) metaplastic breast carcinomas exhibited EGFR ovexpression, and among these EGFR amplification (defined either by large gene clusters or >5 signals/nucleus in >50% of neoplastic cells) was detected in seven cases (37%): three carcinomas with squamous differentiation and four spindle cell carcinomas. 16280056 2005
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.340 Biomarker disease CTD_human DU145 human prostate carcinoma invasiveness is modulated by urokinase receptor (uPAR) downstream of epidermal growth factor receptor (EGFR) signaling. 15302576 2004
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.330 Biomarker disease BEFREE High molecular weight cytokeratins and p63 were helpful to exclude spindle cell carcinoma. 28821190 2017
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.330 Biomarker disease BEFREE Twenty-three of 37 (62%) SCs were positive for pancytokeratin, 23 of 37 (62%) were positive for p63, and 20 of 37 (54%) were positive for p40. 24418859 2014
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.330 Biomarker disease CTD_human Arsenic suppresses cell survival via Pirh2-mediated proteasomal degradation of ΔNp63 protein. 23271742 2013
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.330 GeneticVariation disease BEFREE Forty-six consecutive biopsy/cellblock samples and the corresponding resection specimens (as the gold standard for morphology and IHC) from 30 adenocarcinomas (AD), 10 squamous carcinomas (SQC), 5 adenosquamous carcinomas (ADSQC), and 1 sarcomatoid carcinoma (SC) were IHC-evaluated for p40 [corresponding to nontransactivating ΔNp63 isoforms] and thyroid transcription factor-1 (TTF1) by semiquantitative assessment. 22071786 2012
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.320 GeneticVariation disease BEFREE To find out the difference in immunohistochemical expression of cytokeratin, vimentin and smooth-muscle actin, and mutational alterations in the K-ras oncogene between the two tumours, in an attempt to characterise SpCC. 16731596 2007
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.320 Biomarker disease CTD_human Global gene expression profiling of chemically induced rat mammary gland carcinomas and adenomas. 16316942 2005
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.320 Biomarker disease BEFREE The results confirmed IMFT positivity for smooth muscle actin, desmin and cytokeratin in 78-89% cases, resulting in potential confusion with sarcomatoid carcinoma or leiomyosarcoma. 15105807 2004
Entrez Id: 3852
Gene Symbol: KRT5
KRT5
0.310 Biomarker disease BEFREE Here, we show that human spSCC tumours also feature strong nuclear localisation of YAP and overexpression of activated YAP (NLS-YAP-5SA) with Keratin-5 (K5-CreERt) is sufficient to induce rapid formation of both SCC and spSCC in mice. spSCC tumours arise at sites of epithelial scratch wounding, where tumour-initiating epithelial cells undergo EMT to generate spSCC. 30231971 2018
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.310 GeneticVariation disease BEFREE We sought to better characterize the molecular diversity of SC using mutational signatures that reflect different mutational processes, such as tobacco-associated adducts (signature 4), BRCA1/BRCA2 deficiency (signature 3), or APOBEC enzyme deamination (signatures 2 and 13). 28419182 2017
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.310 AlteredExpression disease BEFREE Without Delta(beta)RII expression, TGF-beta1 transgene induction in late-stage, chemically induced papillomas failed to inhibit tumor growth but increased metastasis and epithelial-to-mesenchymal transition (EMT), i.e., formation of spindle cell carcinomas. 15937546 2005
Entrez Id: 1674
Gene Symbol: DES
DES
0.310 Biomarker disease BEFREE The results confirmed IMFT positivity for smooth muscle actin, desmin and cytokeratin in 78-89% cases, resulting in potential confusion with sarcomatoid carcinoma or leiomyosarcoma. 15105807 2004
Entrez Id: 1674
Gene Symbol: DES
DES
0.310 Biomarker disease CTD_human cDNA microarray profiling of rat mammary gland carcinomas induced by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine and 7,12-dimethylbenz[a]anthracene. 12376462 2002
Entrez Id: 3852
Gene Symbol: KRT5
KRT5
0.310 Biomarker disease CTD_human cDNA microarray profiling of rat mammary gland carcinomas induced by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine and 7,12-dimethylbenz[a]anthracene. 12376462 2002
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.310 Biomarker disease CTD_human Reduced Brca1 protein expression in 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine-induced rat mammary carcinomas. 12203372 2002
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.310 Therapeutic disease CTD_human Rapamycin potentiates transforming growth factor beta-induced growth arrest in nontransformed, oncogene-transformed, and human cancer cells. 12417722 2002
Entrez Id: 3265
Gene Symbol: HRAS
HRAS
0.310 Biomarker disease BEFREE Pleomorphic (giant and spindle cell) carcinoma is genetically distinct from adenocarcinoma and squamous cell carcinoma by K-ras-2 and p53 analysis. 8853037 1996
Entrez Id: 3265
Gene Symbol: HRAS
HRAS
0.310 Biomarker disease CTD_human Infrequent mutation of Ha-ras and p53 in rat mammary carcinomas induced by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine. 8185828 1994
Entrez Id: 387
Gene Symbol: RHOA
RHOA
0.300 Biomarker disease CTD_human Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma. 24816255 2014
Entrez Id: 11151
Gene Symbol: CORO1A
CORO1A
0.300 Biomarker disease CTD_human Methylation silencing of angiopoietin-like 4 in rat and human mammary carcinomas. 21489049 2011
Entrez Id: 1786
Gene Symbol: DNMT1
DNMT1
0.300 Biomarker disease CTD_human DNA methyltransferase 1 as a predictive biomarker and potential therapeutic target for chemotherapy in gastric cancer. 21458988 2011
Entrez Id: 140738
Gene Symbol: TMEM37
TMEM37
0.300 Biomarker disease CTD_human Methylation silencing of angiopoietin-like 4 in rat and human mammary carcinomas. 21489049 2011
Entrez Id: 9540
Gene Symbol: TP53I3
TP53I3
0.300 Biomarker disease CTD_human Methylation silencing of angiopoietin-like 4 in rat and human mammary carcinomas. 21489049 2011
Entrez Id: 4692
Gene Symbol: NDN
NDN
0.300 Biomarker disease CTD_human Methylation silencing of angiopoietin-like 4 in rat and human mammary carcinomas. 21489049 2011