Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1
Gene Symbol: A1BG
A1BG
0.010 Biomarker disease BEFREE GAB Aergics were the most prescribed drugs for epilepsy, and mTOR inhibitors are dramatically replacing surgery in patients with SEGA, despite current recommendations proposing both treatment options. mTOR inhibitors are also becoming common treatments in rAML and LAM patients. 31708865 2019
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.010 GeneticVariation disease BEFREE A subset of subependymal giant cell astrocytoma-like astrocytomas are alternative lenghtening of telomere-positive and occur in the absence of ATRX alterations, thereby suggesting mutations in other DNA repair/maintenance genes may also facilitate alternative lenghtening of telomeres. 29973652 2018
Entrez Id: 406991
Gene Symbol: MIR21
MIR21
0.010 AlteredExpression disease BEFREE Here we show that rapamycin treatment leads to the upregulation of miR-21 in both patients' serum and in primary SEGA tumor cells in the culture indicating the regulatory relationship between rapamycin treatment and miR-21 expression. 30509037 2018
Entrez Id: 7080
Gene Symbol: NKX2-1
NKX2-1
0.010 AlteredExpression disease BEFREE We then examined TTF-1 expression in non-neoplastic brain tissue to determine the cell origin of subependymal giant cell astrocytoma. 27910945 2017
Entrez Id: 5310
Gene Symbol: PKD1
PKD1
0.010 GeneticVariation disease BEFREE Patients with TSC2 mutations, and especially with TSC2/PKD1 mutations, are more prone to develop SEGA earlier in childhood and should be screened for SEGA from birth. 25227171 2014
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.010 AlteredExpression disease BEFREE Immunocytochemical analysis of cortical tubers, as well as subependymal lesions in all cases confirmed the cell-associated activation of the TORC1 signaling pathway in both the cortical tubers and subependymal lesions (including a congenital subependymal giant cell astrocytoma) with expression of pS6, p4EBP1 and c-myc proteins, as well as of p70 S6 kinase 1. 22805177 2013
Entrez Id: 309
Gene Symbol: ANXA6
ANXA6
0.010 AlteredExpression disease BEFREE Immunocytochemical analysis of cortical tubers, as well as subependymal lesions in all cases confirmed the cell-associated activation of the TORC1 signaling pathway in both the cortical tubers and subependymal lesions (including a congenital subependymal giant cell astrocytoma) with expression of pS6, p4EBP1 and c-myc proteins, as well as of p70 S6 kinase 1. 22805177 2013
Entrez Id: 84959
Gene Symbol: UBASH3B
UBASH3B
0.010 AlteredExpression disease BEFREE Immunocytochemical analysis of cortical tubers, as well as subependymal lesions in all cases confirmed the cell-associated activation of the TORC1 signaling pathway in both the cortical tubers and subependymal lesions (including a congenital subependymal giant cell astrocytoma) with expression of pS6, p4EBP1 and c-myc proteins, as well as of p70 S6 kinase 1. 22805177 2013
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.010 AlteredExpression disease BEFREE Expression of EGF, EGFR, HGF, c-Met, and VEGF protein, as well as hypoxia inducible factor-1α, a transcription factor that regulates VEGF levels and is also modulated by mTOR cascade activity, was enhanced in SEGAs (n = 6) and tubers (n = 10) from 15 TSC patients. 21224066 2011
Entrez Id: 27165
Gene Symbol: GLS2
GLS2
0.010 AlteredExpression disease BEFREE LGA mRNA expression was relatively very low in cultured astrocytes, and very low to absent in astrocytoma pilocyticum, ependymoma and subependymal giant cell astrocytoma (SEGA), tumors of astrocytic origin. 17940881 2008
Entrez Id: 983
Gene Symbol: CDK1
CDK1
0.010 AlteredExpression disease BEFREE p34cdc2, collapsin response mediator protein 4 (CRMP4), doublecortin (DCX), HuD, and NeuN expression was assessed in tuber (n = 16) and subependymal giant cell astrocytoma (SEGA; n = 6) specimens in tuberous sclerosis complex to define the developmental phenotype and lineage of giant cells (CGs) in these lesions. 12731003 2003
Entrez Id: 1641
Gene Symbol: DCX
DCX
0.010 Biomarker disease BEFREE p34cdc2, collapsin response mediator protein 4 (CRMP4), doublecortin (DCX), HuD, and NeuN expression was assessed in tuber (n = 16) and subependymal giant cell astrocytoma (SEGA; n = 6) specimens in tuberous sclerosis complex to define the developmental phenotype and lineage of giant cells (CGs) in these lesions. 12731003 2003
Entrez Id: 1809
Gene Symbol: DPYSL3
DPYSL3
0.010 AlteredExpression disease BEFREE p34cdc2, collapsin response mediator protein 4 (CRMP4), doublecortin (DCX), HuD, and NeuN expression was assessed in tuber (n = 16) and subependymal giant cell astrocytoma (SEGA; n = 6) specimens in tuberous sclerosis complex to define the developmental phenotype and lineage of giant cells (CGs) in these lesions. 12731003 2003
Entrez Id: 54997
Gene Symbol: TESC
TESC
0.030 Biomarker disease BEFREE Mutations of the MAPK/TSC/mTOR pathway characterize periventricular glioblastoma with epithelioid SEGA-like morphology-morphological and therapeutic implications. 31258848 2019
Entrez Id: 6559
Gene Symbol: SLC12A3
SLC12A3
0.030 Biomarker disease BEFREE Mutations of the MAPK/TSC/mTOR pathway characterize periventricular glioblastoma with epithelioid SEGA-like morphology-morphological and therapeutic implications. 31258848 2019
Entrez Id: 6559
Gene Symbol: SLC12A3
SLC12A3
0.030 Biomarker disease BEFREE Ten patients (six males, four females; median age 14.23 years) with TSC-related SEGA who met inclusion criteria were included into a single-arm, prospective trial. 27860334 2017
Entrez Id: 54997
Gene Symbol: TESC
TESC
0.030 Biomarker disease BEFREE Ten patients (six males, four females; median age 14.23 years) with TSC-related SEGA who met inclusion criteria were included into a single-arm, prospective trial. 27860334 2017
Entrez Id: 54997
Gene Symbol: TESC
TESC
0.030 GeneticVariation disease BEFREE We also briefly review two important advances in this area: the treatment of medulloblastomas in patients with mutations in the PTCH1 gene, and the discovery of deregulated mammalian target of rapamycin as a major oncogenic driver molecule in patients with TSC mutations and subependymal giant cell astrocytoma. 21042217 2010
Entrez Id: 6559
Gene Symbol: SLC12A3
SLC12A3
0.030 GeneticVariation disease BEFREE We also briefly review two important advances in this area: the treatment of medulloblastomas in patients with mutations in the PTCH1 gene, and the discovery of deregulated mammalian target of rapamycin as a major oncogenic driver molecule in patients with TSC mutations and subependymal giant cell astrocytoma. 21042217 2010
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.090 Biomarker disease BEFREE Compared with the placebo, mTOR inhibitors significantly reduced tumor volume in both angiomyolipoma (AML) (RR = 24.69, 95% CI = 3.51,173.41, P = 0.001) and subependymal giant cell astrocytoma (SEGA) (RR = 27.85, 95% CI = 1.74,444.82, P = 0.02). 30760308 2019
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.090 AlteredExpression disease BEFREE These gene products form a protein complex and normally suppress mammalian target of rapamycin (mTOR) activity. mTOR inhibitors have been used to treat subependymal glioma (SEGA) that is a brain tumor characteristic of TSC. 30467464 2018
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.090 Biomarker disease BEFREE Everolimus is an inhibitor of the mammalian target of rapamycin (mTOR) that has been approved by the US Food and Drug Administration for the treatment of subependymal giant cell astrocytoma (SEGA) in patients with tuberous sclerosis complex (TSC). 29277498 2018
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.090 AlteredExpression disease BEFREE The deregulated mTOR activity leads to multi-site tumors, including subependymal giant cell astrocytoma (SEGA). 30509037 2018
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.090 Biomarker disease BEFREE Currently, mammalian target of rapamycin inhibitors are recommended in adult patients with tuberous sclerosis complex for the treatment of asymptomatic, growing renal angiomyolipoma that are >3 cm in diameter and pediatric or adult patients with brain lesions (subependymal giant cell astrocytoma) that either are growing or are not amenable to surgical resection. 28302901 2017
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.090 Biomarker disease BEFREE We report a 15 year-old girl with tuberous sclerosis complex who proceeded to surgical resection of her subependymal giant cell astrocytoma after 3 months of treatment with mammalian target of rapamycin inhibition. 26173783 2015